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Updated: Mar 2, 2026

Simple and Fast Rolling Circle Amplification-Based Detection of Topoisomerase 1 Activity in Crude Biological Samples
Published on: December 2, 2022
DNA topoisomerase-targeting chemotherapeutics: what's new?
Selma M Cuya1, Mary-Ann Bjornsti1, Robert C A M van Waardenburg2
1Department of Pharmacology and Toxicology, University of Alabama at Birmingham, 155 Volker Hall, 1720 2nd Ave. S., Birmingham, AL, 35294-0019, USA.
Abstract:
To resolve the topological problems that threaten the function and structural integrity of nuclear and mitochondrial genomes and RNA molecules, human cells encode six different DNA topoisomerases including type IB enzymes (TOP1 and TOP1mt), type IIA enzymes (TOP2α and TOP2β) and type IA enzymes (TOP3α and TOP3β). DNA entanglements and the supercoiling of DNA molecules are regulated by topoisomerases through the introduction of transient enzyme-linked DNA breaks. The covalent topoisomerase-DNA complexes are the cellular targets of a diverse group of cancer chemotherapeutics, which reversibly stabilize these reaction intermediates. Here we review the structure-function and catalytic mechanisms of each family of eukaryotic DNA topoisomerases and the topoisomerase-targeting agents currently approved for patient therapy or in clinical trials, and highlight novel developments and challenges in the clinical development of these agents.
Insights
Human cells use DNA topoisomerases to manage DNA topology and integrity. These enzymes, targeted by cancer drugs, are crucial for cellular function and therapeutic development.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Human cells possess six DNA topoisomerases (TOP1, TOP1mt, TOP2α, TOP2β, TOP3α, TOP3β) essential for genome and RNA integrity.
- Topoisomerases regulate DNA supercoiling and resolve topological issues by creating transient DNA breaks.
- Covalent topoisomerase-DNA complexes are key targets for numerous anticancer chemotherapeutics.
Purpose of the Study:
- To review the structure-function and catalytic mechanisms of eukaryotic DNA topoisomerase families.
- To discuss topoisomerase-targeting agents in clinical use or trials.
- To highlight advancements and challenges in the clinical development of these agents.
Main Methods:
- Literature review of eukaryotic DNA topoisomerases.
- Analysis of structure-function and catalytic mechanisms.
- Review of clinical data for topoisomerase-targeting agents.
Main Results:
- Detailed overview of type IB, IIA, and IA topoisomerase families.
- Compilation of approved and investigational topoisomerase-targeting drugs.
- Identification of current challenges and future directions in clinical development.
Conclusions:
- DNA topoisomerases are vital for maintaining genomic stability and are validated targets for cancer therapy.
- Understanding topoisomerase mechanisms informs the development of novel chemotherapeutics.
- Continued research is necessary to overcome challenges in the clinical application of topoisomerase inhibitors.
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