Related Experiment Video
Updated: Mar 1, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
PCDH18 is frequently inactivated by promoter methylation in colorectal cancer
Dan Zhou1,2,3, Weiwei Tang2, Guoqiang Su4
1Key Laboratory of Design and Assembly of Functional Nanostructures, Fujian Provincial Key Laboratory of Nanomaterials, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fujian, China.
Abstract:
Protocadherin18 (PCDH18) was found to be preferentially methylated and inactivated in colorectal cancer (CRC) using bioinformatics tools. However, its biologic role in tumorgenesis remains unclear. Herein, we aimed to elucidate its epigenetic regulation and biological functions in CRC. The methylation status of PCDH18 was significant higher in CRC tissues than in adjacent non-tumor tissues (median, 15.17% vs. median, 0.4438%). Expression level of PCDH18 was significantly lower in primary CRCs than in nonmalignant tissues. Importantly, methylation status of PCDH18 in cell-free DNA of CRC patients was also significantly higher than in healthy subjects. PCDH18 was readily expressed in NCM460 cells, but downregulated in 100% (4/4) of CRC cell lines by promoter methylation, despite its expression could be restored through demethylation treatment. Overexpression of PCDH18 suppressed CRC cell viability, colony formation and migration. Meanwhile, the depletion of PCDH18 by siRNA in NCM460 cells enhanced the colonogenicity and migration ability and promoted β-catenin nuclear accumulation, whereas it inhibited cell cycle arrest. These effects were associated with upregulation of phospho-GSK-3β and cyclin D1, and downregulation of caspase3 and p21. Our results suggested that PCDH18 was a putative tumor suppressor with epigenetic silencing in CRC and a potential biomarker for CRC diagnosis.
Insights
Protocadherin18 (PCDH18) is epigenetically silenced in colorectal cancer (CRC), acting as a tumor suppressor. Its methylation in cell-free DNA may aid CRC diagnosis.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Protocadherin18 (PCDH18) inactivation via methylation is observed in colorectal cancer (CRC).
- The specific role of PCDH18 in CRC tumorigenesis requires elucidation.
Purpose of the Study:
- To investigate the epigenetic regulation of PCDH18 in CRC.
- To determine the biological functions of PCDH18 in colorectal cancer development.
Main Methods:
- Analysis of PCDH18 methylation status in tumor vs. non-tumor tissues and cell-free DNA.
- Assessment of PCDH18 expression in CRC cell lines and its restoration via demethylation.
- Functional studies involving PCDH18 overexpression and knockdown (siRNA) in CRC cells.
Main Results:
- PCDH18 methylation was significantly higher in CRC tissues and patient cell-free DNA compared to controls.
- PCDH18 expression was downregulated in CRC cell lines due to promoter methylation, reversible by demethylation.
- PCDH18 overexpression suppressed CRC cell viability, colony formation, and migration; its depletion enhanced these processes.
Conclusions:
- PCDH18 functions as a tumor suppressor in CRC, exhibiting epigenetic silencing.
- PCDH18 is a potential diagnostic biomarker for colorectal cancer.
Related Concept Videos
Epigenetic Regulation
Epigenetic Regulation
X-chromosome...
Abnormal Proliferation
Loss of Tumor Suppressor Gene Functions
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...

