Neonatal DNA methylation and early-onset conduct problems: A genome-wide, prospective study
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Updated: Mar 1, 2026

Optimized Analysis of DNA Methylation and Gene Expression from Small, Anatomically-defined Areas of the Brain
Published on: July 12, 2012
Charlotte A M Cecil1, Esther Walton2, Sara R Jaffee3
1King's College London.
Insights
Epigenetic variations in cord blood DNA methylation are linked to early-onset conduct problems (CP). These DNA methylation patterns, identified at birth, may predict the development of CP in children.
Area of Science:
- Developmental Psychology
- Behavioral Genetics
- Epigenetics
Background:
- Early-onset conduct problems (CP) predict adult criminality and mental health issues.
- Both genetic and environmental factors contribute to CP, but underlying biological mechanisms are unclear.
- Epigenetic modifications, such as DNA methylation, offer a potential link between genes and environment in CP development.
Purpose of the Study:
- To investigate prospective associations between DNA methylation patterns at birth and the developmental trajectories of conduct problems (CP) from age 4 to 13 years.
- To identify specific epigenetic markers in cord blood associated with the development of early-onset CP.
- To explore the relationship between identified methylation sites, prenatal exposures, and genetic factors.
Main Methods:
- Utilized data from the Avon Longitudinal Study of Parents and Children (ALSPAC).
- Analyzed DNA methylation in cord blood samples from infants.
- Examined associations between methylomic variation and conduct problem trajectories (early-onset vs. low CP) using statistical analyses (e.g., false discovery rate < 0.05).
Main Results:
- Seven genomic loci showed significant methylomic variation differentiating children with early-onset CP from those with low CP.
- Identified methylation sites were located near genes such as monoglyceride lipase (MGLL), monoamine oxidase A (MAOA), brain-derived neurotrophic factor (BDNF), and FK506 binding protein 5 (FKBP5).
- Methylation levels at these sites did not predict persistence or desistance of CP behavior within the early-onset group and correlated with prenatal exposures, not known genetic methylation quantitative trait loci.
Conclusions:
- Specific DNA methylation patterns at birth are associated with the development of early-onset conduct problems.
- These epigenetic findings provide insights into the biological underpinnings of early-onset CP, potentially mediated by prenatal exposures.
- Further research can explore the functional roles of identified genes (e.g., MGLL) in the context of conduct problems and neurodevelopment.
Abstract:
Early-onset conduct problems (CP) are a key predictor of adult criminality and poor mental health. While previous studies suggest that both genetic and environmental risks play an important role in the development of early-onset CP, little is known about potential biological processes underlying these associations. In this study, we examined prospective associations between DNA methylation (cord blood at birth) and trajectories of CP (4-13 years), using data drawn from the Avon Longitudinal Study of Parents and Children. Methylomic variation at seven loci across the genome (false discovery rate < 0.05) differentiated children who go on to develop early-onset (n = 174) versus low (n = 86) CP, including sites in the vicinity of the monoglyceride lipase (MGLL) gene (involved in endocannabinoid signaling and pain perception). Subthreshold associations in the vicinity of three candidate genes for CP (monoamine oxidase A [MAOA], brain-derived neurotrophic factor [BDNF], and FK506 binding protein 5 [FKBP5]) were also identified. Within the early-onset CP group, methylation levels of the identified sites did not distinguish children who will go on to persist versus desist in CP behavior over time. Overall, we found that several of the identified sites correlated with prenatal exposures, and none were linked to known genetic methylation quantitative trait loci. Findings contribute to a better understanding of epigenetic patterns associated with early-onset CP.
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