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A Non-Coding Small RNA MicC Contributes to Virulence in Outer Membrane Proteins in Salmonella Enteritidis
Published on: January 27, 2021
Characterization of a blaNDM‑1‑harboring plasmid from a Salmonella enterica clinical isolate in China
Jinwei Huang1, Shanshan Deng2, Jianmin Ren1
1Department of Infection, The Fifth Affiliated Hospital of Wenzhou Medical University, Lishui, Zhejiang 323000, P.R. China.
Abstract:
The plasmid-mediated transmission of antibiotic resistance genes has been reported to be involved in the development of antibiotic resistance in bacteria, and poses a serious threat for the success of bacterial infection treatment and human health worldwide. The present study used a 454 GS‑FLX pyrosequencing system to determine the ~140 kb nucleotide sequence of plasmid pHS36‑NDM, which was identified in a Salmonella Stanley isolate from the stool sample of an 11‑month‑old girl at Lishui Central Hospital, China, and which contains a New Delhi metallo‑β‑lactamase‑1 (NDM‑1) carbapenem resistance gene (blaNDM‑1). The 181 open reading frames encode proteins with functions including replication, stable inheritance, antibiotic resistance and mobile genetic elements. Both horizontal transfer and passage stability‑related genes were identified in pHS36‑NDM, including a conserved type 4 secretion system and stbA (stable plasmid inheritance protein A). Two multidrug resistance gene islands were identified: The ISEcp1‑blaCMY transposition unit which contains a CMY‑6 β‑lactamase gene (blaCMY‑6) and a quaternary ammonium compound resistance gene (sugE); and the intI1‑ISCR27 accessory region, which contained a trimethoprim resistance gene (dfrA12), two aminoglycoside resistance genes (aadA2 and rmtC), a truncated quaternary ammonium compound resistance gene (qacE∆1), a sulfonamide resistance gene (sul1), the blaNDM‑1 carbapenemase and a bleomycin resistance gene (bleMBL). pHS36‑NDM shared high homology with other blaNDM‑1‑containing plasmids reported in Sweden, Italy and Japan. However, no previous international travel history was documented for the patient and her family, even to neighboring cities. Furthermore, pHS36‑NDM is of a different incompatibility group to other published blaNDM‑1‑carrying plasmids reported in China, with low homology in the surrounding structure of blaNDM‑1. The present study will facilitate the understanding of the underlying resistance and dispersal mechanism of pHS36‑NDM, and will deepen our recognition of the ongoing spread of the blaNDM‑1‑containing plasmids.
Insights
A novel plasmid, pHS36-NDM, carrying the New Delhi metallo-β-lactamase-1 (NDM-1) carbapenem resistance gene was identified in Salmonella Stanley. This finding highlights the complex mechanisms of antibiotic resistance gene spread and poses a significant threat to public health.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Plasmid-mediated antibiotic resistance gene transmission is a major global health concern.
- The emergence of carbapenem resistance, particularly NDM-1, necessitates understanding resistance mechanisms and plasmid dynamics.
Purpose of the Study:
- To sequence and characterize the novel plasmid pHS36-NDM identified in a Salmonella Stanley isolate.
- To elucidate the genetic elements contributing to antibiotic resistance and plasmid stability within pHS36-NDM.
Main Methods:
- Whole-genome sequencing using a 454 GS-FLX pyrosequencing system.
- Bioinformatic analysis to identify open reading frames, resistance genes, and mobile genetic elements.
- Comparative analysis with known NDM-1 plasmids.
Main Results:
- The ~140 kb plasmid pHS36-NDM harbors the blaNDM-1 gene and multiple other resistance genes, including blaCMY-6, sugE, dfrA12, aadA2, rmtC, qacE∆1, sul1, and bleMBL.
- The plasmid contains genes for horizontal transfer and stable inheritance, such as a type 4 secretion system and stbA.
- pHS36-NDM shows homology to international NDM-1 plasmids but differs in incompatibility group and surrounding genetic structure from Chinese isolates.
Conclusions:
- The characterization of pHS36-NDM provides insights into the genetic basis of multidrug resistance and plasmid dissemination.
- Understanding the specific resistance and dispersal mechanisms of this plasmid is crucial for combating the spread of NDM-1 carbapenemase.

