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Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique
Published on: January 14, 2016
RNA Binding Proteins and Genome Integrity
Kensei Nishida1, Yuki Kuwano2, Tatsuya Nishikawa3
1Department of Pathophysiology, Institute of Biomedical Sciences, Tokushima University Graduate School, Tokushima 770-8503, Japan. knishida@tokushima-u.ac.jp.
Abstract:
Genome integrity can be threatened by various endogenous or exogenous events. To counteract these stressors, the DNA damage response network contributes to the prevention and/or repair of genomic DNA damage and serves an essential function in cellular survival. DNA binding proteins are involved in this network. Recently, several RNA-binding proteins (RBPs) that are recruited to DNA damage sites have been shown to be direct players in the prevention or repair of DNA damage. In addition, non-coding RNAs, themselves, are involved in the RNA-mediated DNA repair system. Furthermore, RNA modification such as m6A methylation might also contribute to the ultraviolet-responsive DNA damage response. Accumulating evidence suggests that RNA metabolism is more deeply involved in diverse cellular functions than previously expected, and is also intricately associated with the maintenance of genome integrity. In this review, we highlight the roles of RBPs in the maintenance of genome integrity.
Insights
RNA-binding proteins (RBPs) are crucial for maintaining genome integrity by participating in DNA damage response and repair. This review highlights their essential roles in preventing DNA damage and ensuring cellular survival.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Genome integrity is vital for cellular survival and is threatened by various stressors.
- The DNA damage response network, involving DNA-binding proteins, counteracts these threats.
- Emerging evidence implicates RNA-binding proteins (RBPs) and RNA metabolism in DNA repair processes.
Purpose of the Study:
- To review and highlight the critical roles of RNA-binding proteins (RBPs) in maintaining genome integrity.
- To explore the involvement of RBPs in DNA damage prevention and repair mechanisms.
- To underscore the intricate association between RNA metabolism and genome stability.
Main Methods:
- Literature review of recent studies on RBPs and DNA damage response.
- Analysis of the mechanisms by which RBPs are recruited to DNA damage sites.
- Synthesis of findings on the roles of non-coding RNAs and RNA modifications in DNA repair.
Main Results:
- Several RBPs are recruited to DNA damage sites and directly participate in DNA repair.
- Non-coding RNAs are involved in RNA-mediated DNA repair systems.
- RNA modifications, like m6A methylation, may contribute to DNA damage response, particularly to UV damage.
Conclusions:
- RNA metabolism plays a more significant role in cellular functions, including genome maintenance, than previously understood.
- RBPs are essential players in the network that maintains genome integrity.
- Further research into RNA-related mechanisms will deepen our understanding of genome stability.
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