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Updated: Feb 27, 2026

Preparation of a Corannulene-functionalized Hexahelicene by CopperI-catalyzed Alkyne-azide Cycloaddition of Nonplanar Polyaromatic Units
Published on: September 18, 2016
A new strategy for aromatic ring alkylation in cylindrocyclophane biosynthesis
Hitomi Nakamura1, Erica E Schultz1, Emily P Balskus1
1Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts, USA.
Researchers discovered a novel enzymatic pathway for alkylating aromatic rings, a key organic synthesis reaction previously lacking a biological equivalent. This finding opens new avenues for biocatalysis and metabolic engineering.
Area of Science:
- Organic Chemistry
- Biochemistry
- Enzymology
Background:
- Alkylation of aromatic rings using alkyl halides is a fundamental organic synthesis reaction.
- An enzymatic method for this transformation has remained elusive, limiting biocatalytic applications.
Purpose of the Study:
- To elucidate the enzymatic machinery responsible for cylindrocyclophane biosynthesis.
- To identify novel enzymes involved in carbon-carbon bond formation and aromatic ring functionalization.
Main Methods:
- Investigated the biosynthesis of cylindrocyclophanes in Cylindrospermum licheniforme ATCC 29412.
- Characterized a novel halogenase involved in chlorinating unactivated carbon centers.
- Identified an enzymatic dimerization reaction with sequential, stereospecific alkylations.
Main Results:
- Discovered a novel halogenase that chlorinates unactivated carbon centers.
- Uncovered a previously uncharacterized enzymatic dimerization reaction.
- Demonstrated sequential, stereospecific alkylations of resorcinol aromatic rings.
Conclusions:
- The cylindrocyclophane biosynthetic pathway involves a unique enzymatic cascade for C-C bond formation.
- This discovery provides insights into biocatalysis and metabolic engineering for complex molecule synthesis.
Related Concept Videos
Preparation of Alkynes: Alkylation Reaction
Alkylation of terminal alkynes with primary alkyl halides in the presence of a strong base like sodium amide is one of the common methods for the synthesis of longer carbon-chain alkynes. For example, treatment of 1-propyne with sodium amide followed by reaction with ethyl bromide yields 2-pentyne.
Reduction of Alkynes to cis-Alkenes: Catalytic Hydrogenation
Like alkenes, alkynes can be reduced to alkanes in the presence of transition metal catalysts such as Pt, Pd, or Ni. The reaction involves two sequential syn additions of hydrogen via a cis-alkene intermediate.
Cycloaddition Reactions: Overview
Preparation of Alkynes: Dehydrohalogenation
Alkynes can be prepared by dehydrohalogenation of vicinal or geminal dihalides in the presence of a strong base like sodium amide in liquid ammonia. The reaction proceeds with the loss of two equivalents of hydrogen halide (HX) via two successive E2 elimination reactions.
Alkynes to Aldehydes and Ketones: Hydroboration-Oxidation
One of the convenient methods for the preparation of aldehydes and ketones is via hydration of alkynes. Hydroboration-oxidation of alkynes is an indirect hydration reaction in which an alkyne is treated with borane followed by oxidation with alkaline peroxide to form an enol that rapidly converts into an aldehyde or a ketone. Terminal alkynes form aldehydes, whereas internal alkynes give ketones as the final product.
Electrophilic Addition to Alkynes: Halogenation
Halogenation is another class of electrophilic addition reactions where a halogen molecule gets added across a π bond. In alkynes, the presence of two π bonds allows for the addition of two equivalents of halogens (bromine or chlorine). The addition of the first halogen molecule forms a trans-dihaloalkene as the major product and the cis isomer as the minor product. Subsequent addition of the second equivalent yields the tetrahalide.

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