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Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1
Ivan B Lomakin1, Elena A Stolboushkina2, Anand T Vaidya1
1Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA.
Abstract:
The repertoire of the density-regulated protein (DENR) and the malignant T cell-amplified sequence 1 (MCT-1/MCTS1) oncoprotein was recently expanded to include translational control of a specific set of cancer-related mRNAs. DENR and MCT-1 form the heterodimer, which binds to the ribosome and operates at both translation initiation and reinitiation steps, though by a mechanism that is yet unclear. Here, we determined the crystal structure of the human small ribosomal subunit in complex with DENR-MCT-1. The structure reveals the location of the DENR-MCT-1 dimer bound to the small ribosomal subunit. The binding site of the C-terminal domain of DENR on the ribosome has a striking similarity with those of canonical initiation factor 1 (eIF1), which controls the fidelity of translation initiation and scanning. Our findings elucidate how the DENR-MCT-1 dimer interacts with the ribosome and have functional implications for the mechanism of unconventional translation initiation and reinitiation.
Insights
The density-regulated protein (DENR)-malignant T cell-amplified sequence 1 (MCT-1) complex binds ribosomes to control cancer-related mRNA translation. Structural analysis reveals its ribosome interaction site, offering insights into translation initiation mechanisms.
Area of Science:
- Molecular Biology
- Structural Biology
- Cancer Research
Background:
- Density-regulated protein (DENR) and malignant T cell-amplified sequence 1 (MCT-1/MCTS1) oncoprotein regulate cancer-related mRNA translation.
- DENR and MCT-1 form a heterodimer that binds ribosomes, influencing translation initiation and reinitiation.
Purpose of the Study:
- To determine the crystal structure of the human small ribosomal subunit in complex with the DENR-MCT-1 dimer.
- To elucidate the binding site and mechanism of DENR-MCT-1 interaction with the ribosome.
Main Methods:
- X-ray crystallography
- Structural analysis of protein-ribosome complex
Main Results:
- The crystal structure of the human small ribosomal subunit complexed with DENR-MCT-1 was determined.
- The DENR-MCT-1 dimer binds to the small ribosomal subunit.
- The DENR C-terminal domain binding site on the ribosome resembles that of translation initiation factor 1 (eIF1).
Conclusions:
- The study reveals the structural basis of DENR-MCT-1 interaction with the ribosome.
- Findings provide insights into the mechanism of unconventional translation initiation and reinitiation.
- This structural information has implications for understanding cancer-related translational control.
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