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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Novel Genetic Triggers and Genotype-Phenotype Correlations in Patients With Left Ventricular Noncompaction
Insights
Left ventricular noncompaction (LVNC) and left ventricular hypertrabeculation (LVHT) are part of a genetic disease spectrum. The number of variants of interest (VOIs) correlates with disease severity in LVNC and LVHT patients.
Area of Science:
- Cardiology
- Genetics
- Molecular Biology
Background:
- Left ventricular noncompaction (LVNC) is a rare genetic heart condition with unclear diagnostic criteria.
- Genetic and phenotypic heterogeneity complicates LVNC diagnosis and understanding.
Purpose of the Study:
- To identify novel genetic causes of LVNC.
- To establish genotype-phenotype correlations in LVNC and LVHT.
Main Methods:
- Whole-exome sequencing was performed on 190 patients with LVHT or LVNC.
- 425 control individuals were included for variant analysis.
- Cardiac magnetic resonance imaging was used to assess cardiac structure and function.
Main Results:
- 138 variants of interest (VOIs) were identified in 102 patients (59%) across 54 known cardiomyopathy genes.
- VOIs were found in 76% of LVNC probands and 40% of LVHT probands.
- An increasing number of VOIs correlated with increased disease severity markers.
Conclusions:
- LVHT and LVNC represent a disease continuum influenced by the number and type of genetic variants.
- Genetic variants are common in LVHT patients.
- Findings enhance clinical and genetic diagnostic strategies for LVHT and LVNC.
Background:
Left ventricular noncompaction (LVNC) is a genetically and phenotypically heterogeneous disease and, although increasingly recognized in clinical practice, there is a lack of widely accepted diagnostic criteria. We sought to identify novel genetic causes of LVNC and describe genotype-phenotype correlations.
Methods And Results:
A total of 190 patients from 174 families with left ventricular hypertrabeculation (LVHT) or LVNC were referred for cardiac magnetic resonance and whole-exome sequencing. A total of 425 control individuals were included to identify variants of interest (VOIs). We found an excess of 138 VOIs in 102 (59%) unrelated patients in 54 previously identified LVNC or other known cardiomyopathy genes. VOIs were found in 68 of 90 probands with LVNC and 34 of 84 probands with LVHT (76% and 40%, respectively; P<0.001). We identified 0, 1, and ≥2 VOIs in 72, 74, and 28 probands, respectively. We found increasing number of VOIs in a patient strongly correlated with several markers of disease severity, including ratio of noncompacted to compacted myocardium (P<0.001) and left ventricular ejection fraction (P=0.01). The presence of sarcomeric gene mutations was associated with increased occurrence of late gadolinium enhancement (P=0.004).
Conclusions:
LVHT and LVNC likely represent a continuum of genotypic disease with differences in severity and variable phenotype explained, in part, by the number of VOIs and whether mutations are present in sarcomeric or nonsarcomeric genes. Presence of VOIs is common in patients with LVHT. Our findings expand the current clinical and genetic diagnostic approaches for patients with LVHT and LVNC.
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