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Updated: Feb 24, 2026

Genetic Studies of Human DNA Repair Proteins Using Yeast as a Model System
Published on: March 18, 2010
mlh3 mutations in baker's yeast alter meiotic recombination outcomes by increasing noncrossover events genome-wide
Najla Al-Sweel1, Vandana Raghavan1, Abhishek Dutta2
1Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Abstract:
Mlh1-Mlh3 is an endonuclease hypothesized to act in meiosis to resolve double Holliday junctions into crossovers. It also plays a minor role in eukaryotic DNA mismatch repair (MMR). To understand how Mlh1-Mlh3 functions in both meiosis and MMR, we analyzed in baker's yeast 60 new mlh3 alleles. Five alleles specifically disrupted MMR, whereas one (mlh3-32) specifically disrupted meiotic crossing over. Mlh1-mlh3 representatives for each class were purified and characterized. Both Mlh1-mlh3-32 (MMR+, crossover-) and Mlh1-mlh3-45 (MMR-, crossover+) displayed wild-type endonuclease activities in vitro. Msh2-Msh3, an MSH complex that acts with Mlh1-Mlh3 in MMR, stimulated the endonuclease activity of Mlh1-mlh3-32 but not Mlh1-mlh3-45, suggesting that Mlh1-mlh3-45 is defective in MSH interactions. Whole genome recombination maps were constructed for wild-type and MMR+ crossover-, MMR- crossover+, endonuclease defective and null mlh3 mutants in an S288c/YJM789 hybrid background. Compared to wild-type, all of the mlh3 mutants showed increases in the number of noncrossover events, consistent with recombination intermediates being resolved through alternative recombination pathways. Our observations provide a structure-function map for Mlh3 that reveals the importance of protein-protein interactions in regulating Mlh1-Mlh3's enzymatic activity. They also illustrate how defective meiotic components can alter the fate of meiotic recombination intermediates, providing new insights for how meiotic recombination pathways are regulated.
Insights
The Mlh1-Mlh3 endonuclease
Area of Science:
- Genetics
- Molecular Biology
- Biochemistry
Background:
- Mlh1-Mlh3 is an endonuclease involved in resolving double Holliday junctions during meiosis and plays a role in DNA mismatch repair (MMR).
- Understanding Mlh1-Mlh3 function in both processes is crucial for comprehending genome stability and meiotic recombination.
- Previous studies have suggested a role for Mlh1-Mlh3 in resolving meiotic crossovers and its involvement in MMR.
Purpose of the Study:
- To elucidate the structure-function relationship of Mlh3 in yeast.
- To investigate how Mlh1-Mlh3 interacts with other proteins, specifically MSH complexes, in MMR.
- To analyze the impact of Mlh3 mutations on meiotic recombination and MMR pathways.
Main Methods:
- Analysis of 60 new mlh3 alleles in baker's yeast (Saccharomyces cerevisiae).
- Purification and in vitro characterization of Mlh1-Mlh3 protein complexes.
- Construction of whole-genome recombination maps for various mlh3 mutants.
Main Results:
- Identified specific mlh3 alleles affecting either MMR or meiotic crossing over.
- Demonstrated that Mlh1-Mlh3 endonuclease activity is regulated by protein-protein interactions, particularly with MSH complexes.
- Observed an increase in noncrossover events in mlh3 mutants, indicating alternative resolution pathways for recombination intermediates.
Conclusions:
- Mlh3's enzymatic activity is modulated by protein interactions, crucial for its dual role in meiosis and MMR.
- Defects in meiotic components like Mlh3 can reroute meiotic recombination intermediates.
- Provides insights into the regulation of meiotic recombination pathways and the structure-function of Mlh3.
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