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Updated: Feb 24, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
A Loss-of-Function Splice Acceptor Variant in IGF2 Is Protective for Type 2 Diabetes.
Josep M Mercader1,2,3, Rachel G Liao1, Avery D Bell4,5,6
1Broad Metabolism Program and Program in Medical and Population Genetics, Broad Institute, Cambridge, MA.
A novel genetic variant in the IGF2 gene significantly reduces type 2 diabetes risk by lowering IGF2 isoform 2 expression. This finding suggests a potential new therapeutic strategy for type 2 diabetes with no adverse health effects.
Area of Science:
- Genetics
- Metabolic Diseases
- Molecular Biology
Background:
- Type 2 diabetes (T2D) is a global health concern with rising costs.
- Identifying genetic factors influencing T2D risk is crucial for therapeutic development.
Purpose of the Study:
- To identify genetic variations associated with T2D in Latino populations.
- To explore the therapeutic potential of identified genetic variants.
Main Methods:
- Genome-wide analysis of protein-coding variation in 8,227 T2D cases and 12,966 controls of Latino descent.
- In vitro and human tissue studies to assess the functional impact of a novel IGF2 variant.
- Phenotypic examination of variant carriers.
Main Results:
- A novel variant in the IGF2 gene was identified, associated with a ~20% reduced risk of T2D.
- This variant disrupts IGF2 splicing, leading to reduced expression of IGF2 isoform 2 in an allele-dosage-dependent manner.
- Reduced IGF2 isoform 2 expression in adipose tissue correlated with lower T2D incidence and glycated hemoglobin levels.
Conclusions:
- Reducing IGF2 isoform 2 expression presents a potential therapeutic strategy for T2D.
- The identified variant shows no adverse effects on other health or reproductive parameters.
- This finding has implications for T2D treatment beyond the studied population.
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