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Updated: Feb 23, 2026

Efficient Sampling of Genetically Encoded Biosensor Design Space Enabled with a Design of Experiments and Automation Workflow
Published on: October 17, 2025
Genetic Design via Combinatorial Constraint Specification
Swapnil P Bhatia1, Michael J Smanski2, Christopher A Voigt3
1Biological Design Center, Department of Electrical and Computer Engineering, Boston University , Boston, Massachusetts 02215, United States.
Abstract:
We present a formal language for specifying via constraints a "design space" of DNA constructs composed of genetic parts, and an algorithm for automatically and correctly creating a novel representation of the space of satisfying designs. The language is simple, captures a large class of design spaces, and possesses algorithms for common operations on design spaces. The flexibility of this approach is demonstrated using a 16-gene nitrogen fixation pathway and genetic logic circuits.
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