Vorinostat suppresses hypoxia signaling by modulating nuclear translocation of hypoxia inducible factor 1 alpha
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Updated: Feb 22, 2026

Co-immunoprecipitation Assay Using Endogenous Nuclear Proteins from Cells Cultured Under Hypoxic Conditions
Published on: August 2, 2018
Chao Zhang1,2, Chunzhang Yang3, Michael J Feldman4
1Department of Orthopedics, Xinqiao Hospital, The Third Military Medical University, Chongqing, China.
Abstract:
Histone deacetylase inhibitors (HDACis) are a potent class of tumor-suppressive agents traditionally believed to exert their effects through loosening tightly-wound chromatin resulting in de-inhibition of various tumor suppressive genes. Recent literature however has shown altered intratumoral hypoxia signaling with HDACi administration not attributable to changes in chromatin structure. We sought to determine the precise mechanism of HDACi-mediated hypoxia signaling attenuation using vorinostat (SAHA), an FDA-approved class I/IIb/IV HDACi. Through an in-vitro and in-vivo approach utilizing cell lines for hepatocellular carcinoma (HCC), osteosarcoma (OS), and glioblastoma (GBM), we demonstrate that SAHA potently inhibits HIF-a nuclear translocation via direct acetylation of its associated chaperone, heat shock protein 90 (Hsp90). In the presence of SAHA we found elevated levels of acetyl-Hsp90, decreased interaction between acetyl-Hsp90 and HIF-a, decreased nuclear/cytoplasmic HIF-α expression, absent HIF-α association with its nuclear karyopharyin Importin, and markedly decreased HIF-a transcriptional activity. These changes were associated with downregulation of downstream hypoxia molecules such as endothelin 1, erythropoietin, glucose transporter 1, and vascular endothelial growth factor. Findings were replicated in an in-vivo Hep3B HRE-Luc expressing xenograft, and were associated with significant decreases in xenograft tumor size. Altogether, this study highlights a novel mechanism of action of an important class of chemotherapeutic.
Insights
Histone deacetylase inhibitors (HDACis) like vorinostat suppress tumors by blocking HIF-alpha
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- Histone deacetylase inhibitors (HDACis) are tumor suppressors.
- HDACis are thought to work by altering chromatin structure.
- Recent findings suggest HDACis affect hypoxia signaling independently of chromatin changes.
Purpose of the Study:
- To investigate the mechanism of HDAC inhibitor-mediated hypoxia signaling attenuation.
- To determine if vorinostat (SAHA) affects hypoxia signaling through a non-chromatin mechanism.
Main Methods:
- Utilized in vitro and in vivo models of hepatocellular carcinoma (HCC), osteosarcoma (OS), and glioblastoma (GBM).
- Investigated the effect of SAHA on HIF-alpha nuclear translocation and its interaction with heat shock protein 90 (Hsp90).
- Assessed downstream hypoxia-inducible gene expression and tumor growth in xenograft models.
Main Results:
- SAHA directly acetylates Hsp90, reducing its interaction with HIF-alpha.
- SAHA inhibits HIF-alpha nuclear translocation and transcriptional activity.
- Downstream hypoxia markers and tumor growth were significantly reduced in vivo.
Conclusions:
- SAHA inhibits hypoxia signaling by targeting Hsp90 acetylation, a novel mechanism of action.
- This non-chromatin effect contributes to the tumor-suppressive activity of HDACis.
- Highlights a new therapeutic strategy involving HDACis and hypoxia pathways.
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