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Updated: Feb 21, 2026

Large-scale Three-dimensional Imaging of Cellular Organization in the Mouse Neocortex
Published on: September 5, 2018
Cell-Specific Gene-Expression Profiles and Cortical Thickness in the Human Brain
Jean Shin1,2, Leon French3,4,5, Ting Xu6
1The Hospital for Sick Children, University of Toronto, Toronto, Canada.
This study reveals how specific brain cell types, including pyramidal cells and microglia, influence cortical thickness and thinning in adolescents. These findings offer insights into the neurobiological basis of brain structure variations.
Area of Science:
- Neuroscience
- Genetics
- Brain Imaging
Background:
- The neurobiological basis of human cortical thickness and its age-related changes remains largely unexplored.
- Understanding these underpinnings is crucial for deciphering brain development, aging, and neurological disorders.
Purpose of the Study:
- To investigate the contribution of distinct neural cell types to regional variations in cortical thickness and thinning in the adolescent brain.
- To identify specific cell types and associated biological processes that explain structural differences in the cortex.
Main Methods:
- Utilized cell-type-specific gene markers from the Allen Human Brain Atlas and BrainSpan Atlas.
- Analyzed cortical thickness and thinning data from 987 adolescents using magnetic resonance imaging.
- Employed Gene Ontology analysis to explore functional implications of cell-type contributions.
Main Results:
- Gene expression profiles of CA1 pyramidal cells, astrocytes, and microglia significantly correlated with regional cortical thickness, explaining 70% of the variation.
- Inter-regional cortical thinning patterns were associated with gene expression in CA1 and S1 pyramidal cells, astrocytes, and microglia.
- Differences in CA1 and S1 pyramidal cell contributions may relate to neuronal plasticity and potassium channel activity, respectively.
Conclusions:
- This
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