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Published on: May 15, 2018
Mendelian Randomization
Sandeep Grover1, Fabiola Del Greco M2, Catherine M Stein3
1Institut für Medizinische Biometrie und Statistik, Universität zu Lübeck, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Lübeck, Germany.
Abstract:
Confounding and reverse causality have prevented us from drawing meaningful clinical interpretation even in well-powered observational studies. Confounding may be attributed to our inability to randomize the exposure variable in observational studies. Mendelian randomization (MR) is one approach to overcome confounding. It utilizes one or more genetic polymorphisms as a proxy for the exposure variable of interest. Polymorphisms are randomly distributed in a population, they are static throughout an individual's lifetime, and may thus help in inferring directionality in exposure-outcome associations. Genome-wide association studies (GWAS) or meta-analyses of GWAS are characterized by large sample sizes and the availability of many single nucleotide polymorphisms (SNPs), making GWAS-based MR an attractive approach. GWAS-based MR comes with specific challenges, including multiple causality. Despite shortcomings, it still remains one of the most powerful techniques for inferring causality.With MR still an evolving concept with complex statistical challenges, the literature is relatively scarce in terms of providing working examples incorporating real datasets. In this chapter, we provide a step-by-step guide for causal inference based on the principles of MR with a real dataset using both individual and summary data from unrelated individuals. We suggest best possible practices and give recommendations based on the current literature.
Insights
Mendelian randomization (MR) uses genetic variants to overcome confounding in observational studies, enabling causal inference. This guide provides practical examples for applying MR with real data, enhancing its clinical utility despite challenges.
Area of Science:
- Epidemiology
- Genetic Epidemiology
- Biostatistics
Background:
- Observational studies face challenges with confounding and reverse causality, limiting clinical interpretation.
- Randomizing exposure variables is often not feasible in observational research.
- Mendelian randomization (MR) offers a powerful approach to address these limitations using genetic variants.
Purpose of the Study:
- To provide a practical, step-by-step guide for causal inference using Mendelian randomization.
- To demonstrate the application of MR principles with real-world individual and summary data.
- To offer best practices and recommendations for conducting GWAS-based MR.
Main Methods:
- Utilizing genetic polymorphisms (SNPs) as instrumental variables for exposure variables.
- Employing Genome-Wide Association Studies (GWAS) and meta-analyses of GWAS for large sample sizes.
- Applying MR principles to both individual and summary-level data from unrelated individuals.
Main Results:
- Demonstrates the feasibility of causal inference through MR with real datasets.
- Highlights the utility of GWAS-derived SNPs in MR analyses.
- Addresses challenges such as multiple causality in GWAS-based MR.
Conclusions:
- Mendelian randomization is a robust technique for inferring causality despite statistical complexities.
- Practical examples and best practices are crucial for advancing the application of MR.
- This guide facilitates the use of MR for more reliable causal inference in research.
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