Molecular profiling and combinatorial activity of CCT068127: a potent CDK2 and CDK9 inhibitor
Steven R Whittaker1, Clare Barlow1, Mathew P Martin2
1Cancer Research UK Cancer Therapeutics Unit, Division of Cancer Therapeutics, The Institute of Cancer Research, London, UK.
Abstract:
Deregulation of the cyclin-dependent kinases (CDKs) has been implicated in the pathogenesis of multiple cancer types. Consequently, CDKs have garnered intense interest as therapeutic targets for the treatment of cancer. We describe herein the molecular and cellular effects of CCT068127, a novel inhibitor of CDK2 and CDK9. Optimized from the purine template of seliciclib, CCT068127 exhibits greater potency and selectivity against purified CDK2 and CDK9 and superior antiproliferative activity against human colon cancer and melanoma cell lines. X-ray crystallography studies reveal that hydrogen bonding with the DFG motif of CDK2 is the likely mechanism of greater enzymatic potency. Commensurate with inhibition of CDK activity, CCT068127 treatment results in decreased retinoblastoma protein (RB) phosphorylation, reduced phosphorylation of RNA polymerase II, and induction of cell cycle arrest and apoptosis. The transcriptional signature of CCT068127 shows greatest similarity to other small-molecule CDK and also HDAC inhibitors. CCT068127 caused a dramatic loss in expression of DUSP6 phosphatase, alongside elevated ERK phosphorylation and activation of MAPK pathway target genes. MCL1 protein levels are rapidly decreased by CCT068127 treatment and this associates with synergistic antiproliferative activity after combined treatment with CCT068127 and ABT263, a BCL2 family inhibitor. These findings support the rational combination of this series of CDK2/9 inhibitors and BCL2 family inhibitors for the treatment of human cancer.
Insights
A new drug, CCT068127, effectively inhibits cyclin-dependent kinases (CDK2 and CDK9), showing promise for cancer treatment. This CDK inhibitor demonstrates potent anti-cancer activity and synergizes with BCL2 inhibitors for enhanced therapeutic effects.
Area of Science:
- Molecular Biology
- Cancer Therapeutics
- Pharmacology
Background:
- Cyclin-dependent kinases (CDKs) are frequently deregulated in cancer, making them critical therapeutic targets.
- Existing CDK inhibitors like seliciclib provide a foundation for developing more potent and selective agents.
- Understanding the molecular mechanisms of CDK inhibition is crucial for advancing cancer treatment strategies.
Purpose of the Study:
- To investigate the molecular and cellular effects of CCT068127, a novel inhibitor targeting CDK2 and CDK9.
- To evaluate the antiproliferative activity and therapeutic potential of CCT068127 in human cancer cell lines.
- To explore the synergistic effects of CCT068127 in combination with other targeted cancer therapies.
Main Methods:
- Enzymatic assays to determine potency and selectivity against purified CDK2 and CDK9.
- X-ray crystallography to elucidate the binding mechanism of CCT068127 with CDK2.
- Cell-based assays to assess antiproliferative activity, cell cycle effects, apoptosis, and pathway modulation in colon cancer and melanoma cells.
Main Results:
- CCT068127 demonstrated enhanced potency and selectivity for CDK2 and CDK9 compared to its precursor, seliciclib.
- The drug induced cell cycle arrest and apoptosis by inhibiting RB and RNA polymerase II phosphorylation.
- CCT068127 showed synergistic antiproliferative effects when combined with BCL2 family inhibitors, partly due to MCL1 downregulation.
Conclusions:
- CCT068127 is a potent CDK2/9 inhibitor with significant antiproliferative activity against human cancer cells.
- Its mechanism involves disruption of cell cycle progression and induction of apoptosis.
- The combination of CCT068127 with BCL2 inhibitors presents a promising therapeutic strategy for cancer treatment.
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