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Updated: Feb 20, 2026

Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions
Published on: January 30, 2018
Protonation-dependent heterogeneity in fluorescent binding sites in sub-fractions of fulvic acid using principle
Fanhao Song1, Fengchang Wu1, Baoshan Xing2
1State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Science, Beijing 10012, China.
Abstract:
Heterogeneous distributions of proton binding sites within sub-fractions of fulvic acid (FA3-FA13) were investigated by use of synchronous fluorescence spectra (SFS), combined with principle component analysis (PCA) and two-dimensional correlation spectroscopy (2D-COS). Tryptophan-like, fulvic-like and humic-like materials were observed in SFS. Tyrosine-like materials were identified by use of SFS-PCA analysis. Combined information from synchronous-asynchronous maps and dissociation constants (pKa) was used to describe heterogeneity of binding sites for protons within each sub-fraction. Heterogeneous distributions of proton binding sites were observed in fulvic-like, humic-like, tryptophan-like, and tyrosine-like materials of five sub-fractions and even in the single fulvic-like materials in FA3 and tryptophan-like materials in FA9 and FA13. Values of pKa of sub-fractions ranged from 2.20 to 5.29, depending on associated wavelengths in synchronous-asynchronous maps and use of the modified Stern-Volmer equation. The larger values of pKa (4.17-5.29) were established for protein-like materials (including tryptophan-like and tyrosine-like materials) in comparison to those (2.20-3.38) for humic-like and fulvic-like materials in sub-fractions. Sequential variations of 274nm (pKa 4.15-5.29)→360-460nm (pKa 2.78-2.39) for FA5-FA13 revealed that binding of protons to tryptophan-like materials appeared prior to humic-like/fulvic-like materials. In FA9, protons were preferentially binding to tryptophan-like materials than tyrosine-like materials. In FA3, protons were preferentially binding to humic-like materials than fulvic-like materials. Relative differences of values of pKa for fluorescent materials within each sub-fraction were consistent with sequential orders derived from asynchronous maps. Such an integrated approach, SFS-PCA/2D-COS, has superior potential for further applications in exploring complex interactions between dissolved organic matter and contaminants in engineered and natural environments.
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