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Updated: Feb 18, 2026

Collection and Extraction of Occupational Air Samples for Analysis of Fungal DNA
Published on: May 2, 2018
[Classical and molecular methods for identification and quantification of domestic moulds]
1Université Lille, CNRS, Inserm, CHU de Lille, institut Pasteur de Lille, U1019 - UMR 8204 - CIIL -Center for Infection and Immunity of Lille, 59000 Lille, France; CHU Lille, Laboratoire de parasitologie-mycologie, 59000 Lille, France.
Introduction:
To study the impact of the constant and inevitable inhalation of moulds, it is necessary to sample, identify and count the spores.
Background:
Environmental sampling methods can be separated into three categories: surface sampling is easy to perform but non quantitative, air sampling is easy to calibrate but provides time limited information, and dust sampling which is more representative of long term exposure to moulds. The sampling strategy depends on the objectives (evaluation of the risk of exposure for individuals; quantification of the household contamination; evaluation of the efficacy of remediation). The mould colonies obtained in culture are identified using microscopy, Maldi-TOF, and/or DNA sequencing.
Viewpoints:
Electrostatic dust collectors are an alternative to older methods for identifying and quantifying household mould spores. They are easy to use and relatively cheap. Colony counting should be progressively replaced by quantitative real-time PCR, which is already validated, while waiting for more standardised high throughput sequencing methods for assessment of mould contamination without technical bias.
Conclusion:
Despite some technical recommendations for obtaining reliable and comparable results, the huge diversity of environmental moulds, the variable quantity of spores inhaled and the association with other allergens (mites, plants) make the evaluation of their impact on human health difficult. Hence there is a need for reliable and generally applicable quantitative methods.
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