Related Experiment Video
Updated: Feb 18, 2026

Comparing the Affinity of GTPase-binding Proteins using Competition Assays
Published on: October 8, 2015
Structural basis for the assembly of the Ragulator-Rag GTPase complex
Ryo Yonehara1, Shigeyuki Nada2, Tomokazu Nakai2
1Laboratory of Supramolecular Crystallography, Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
The protein p18 acts as a scaffold, organizing Rag GTPases on lysosomes to control nutrient sensing and cell growth via mTORC1 activation. This structure reveals how cells sense nutrients to regulate growth.
Area of Science:
- Cell Biology
- Molecular Biology
- Structural Biology
Background:
- The mechanistic target of rapamycin complex 1 (mTORC1) regulates cell growth and metabolism.
- mTORC1 activity is controlled by Rag GTPases, which localize to lysosomes via the Ragulator complex.
- Ragulator is a pentameric complex including p18/LAMTOR1 and roadblock heterodimers.
Purpose of the Study:
- To elucidate the molecular basis of Rag GTPase regulation by determining the structure of Ragulator.
- To understand the role of p18 in assembling the Ragulator-Rag GTPase complex on lysosomes.
- To investigate the mechanism of amino acid-dependent mTORC1 activation.
Main Methods:
- X-ray crystallography to determine the structure of Ragulator in complex with Rag GTPase roadblock domains.
- Cellular assays to assess the requirement of p18 for complex assembly and mTORC1 activation.
- In vitro biochemical analyses to confirm functional roles.
Main Results:
- The crystal structure reveals how p18 organizes roadblock heterodimers to assemble onto lysosomes.
- p18 acts as a scaffold, wrapping around and tandemly assembling roadblock heterodimers.
- p18 is essential for Ragulator-Rag GTPase complex formation and nutrient-dependent mTORC1 activation.
Conclusions:
- p18 is a critical organizing scaffold for the Ragulator-Rag GTPase complex on lysosomes.
- This complex serves as a platform for nutrient sensing, regulating mTORC1.
- The findings provide molecular insights into nutrient-mediated regulation of cell growth.
Related Concept Videos
Coat Assembly and GTPases
Coat assembly depends on the local availability of phosphatidylinositol phosphates or PIPs and GTP-binding proteins. Adaptor proteins, which link the coat proteins to the membrane, bind to these PIPs and play a crucial role in controlling...
Rab Cascades
Microtubule Formation
Rab Proteins
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...
Generation of Straight or Branched Actin Filaments
Arp2/3 Complex
Arp2/3 complex is a seven-subunit complex consisting of two proteins similar to actin- Arp2 and Arp3, and five other subunits that help keep Arp2 and Arp3 inactive. When required, the complex is...
Small GTPases - Ras and Rho
Three regulatory proteins control their activity:

