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Updated: Feb 17, 2026

Population and Single-Cell Analysis of Antibiotic Persistence in Escherichia coli
Published on: March 24, 2023
Understanding and Sensitizing Density-Dependent Persistence to Quinolone Antibiotics
Arnaud Gutierrez1, Saloni Jain2, Prerna Bhargava1
1Institute for Medical Engineering & Science, Department of Biological Engineering, and Synthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
High-density bacterial persistence to quinolone antibiotics is caused by metabolic exhaustion. Supplementing with glucose and electron acceptors re-sensitizes bacteria, offering a strategy to kill non-dividing populations.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- Antibiotic treatment faces challenges from physiological and environmental factors affecting drug activity.
- Quinolone antibiotics, targeting bacterial topoisomerases, are ineffective against high-density bacterial cultures, a phenomenon termed persistence.
- The underlying mechanisms of this growth phase-dependent antibiotic persistence remain largely unknown.
Purpose of the Study:
- To elucidate the mechanistic basis for quinolone antibiotic persistence in high-density bacterial cultures.
- To identify metabolic factors contributing to bacterial resistance to quinolone antibiotics.
- To develop a strategy for sensitizing non-dividing bacteria to quinolone killing.
Main Methods:
- Investigated the link between bacterial metabolism and quinolone efficacy in stationary-phase cultures.
- Supplemented high-density cultures of Escherichia coli, Staphylococcus aureus, and Mycobacterium smegmatis with glucose and terminal electron acceptors.
- Assessed the impact of metabolic stimulation on bacterial susceptibility to quinolone antibiotics.
Main Results:
- Exhaustion of metabolic inputs for oxidative phosphorylation is a key driver of quinolone persistence.
- Supplementation with glucose and a terminal electron acceptor restored sensitivity to quinolone antibiotics in high-density cultures.
- This metabolic intervention successfully sensitized diverse bacterial species, including E. coli, S. aureus, and M. smegmatis, to quinolone killing.
Conclusions:
- Bacterial persistence to quinolone antibiotics is directly linked to impairments in respiratory metabolism.
- Stimulating respiratory metabolism can overcome growth phase-dependent antibiotic resistance.
- This study provides a novel strategy to enhance the efficacy of quinolone antibiotics against non-dividing bacterial populations.
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