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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long non-coding RNA MALAT1 protects preterm infants with bronchopulmonary dysplasia by inhibiting cell apoptosis
Cheng Cai1, Jiajun Qiu1, Gang Qiu1
1Department of Neonatology, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai, People's Republic of China, 200062.
Insights
Increased MALAT1 lncRNA expression protects preterm infants from bronchopulmonary dysplasia (BPD) by reducing cell apoptosis. This finding offers new avenues for BPD prevention and treatment strategies.
Area of Science:
- Neonatal Medicine
- Molecular Biology
- Genetics
Background:
- Bronchopulmonary dysplasia (BPD) is a chronic lung disease in preterm infants with poorly understood molecular underpinnings.
- Long non-coding RNAs (lncRNAs) are implicated in lung development, but their role in BPD pathogenesis remains unclear.
- This study investigates the function of MALAT1 in BPD.
Purpose of the Study:
- To clarify the role of MALAT1 in the development of bronchopulmonary dysplasia (BPD) in preterm infants.
- To elucidate the protective mechanisms of MALAT1 in the context of BPD.
- To explore MALAT1's potential as a therapeutic target for BPD.
Main Methods:
- Assessed MALAT1 expression in mouse BPD models and human patient samples using gene expression datasets and qRT-PCR.
- Analyzed the impact of MALAT1 knockdown on gene expression and apoptosis in lung cells.
- Utilized bioinformatics and FACS analysis to investigate cellular mechanisms.
Main Results:
- MALAT1 expression was significantly upregulated in lung tissues of BPD mice and in blood samples from preterm infants with BPD.
- MALAT1 knockdown in lung cells led to differential gene expression related to apoptosis pathways.
- Reduced MALAT1 expression correlated with decreased expression of the anti-apoptotic gene CDC6 and increased cell apoptosis.
Conclusions:
- Upregulation of lncRNA MALAT1 demonstrates a protective effect in preterm infants with BPD by inhibiting cell apoptosis.
- These findings provide novel insights into MALAT1 regulation in cell fate determination.
- MALAT1 presents a potential target for the prevention and treatment of BPD.
Background:
Bronchopulmonary dysplasia (BPD) is a neonatal chronic lung disease characterized by impaired pulmonary alveolar development in preterm infants. Until now, little is known about the molecular and cellular basis of BPD. There is increasing evidence that lncRNAs regulate cell proliferation and apoptosis during lung organogenesis. The potential role of lncRNAs in the pathogenesis of BPD is unclear. This study aims to clarify the role of MALAT1 during the process of BPD in preterm infants and illustrate the protective effect of MALAT1 involved in preterm infants.
Methods:
We assessed the expression of MALAT1 in BPD mice lung tissues by reanalyzing dataset GSE25286 (Mouse GEO Genome 4302 Array) from gene expression database gene expression omnibus (GEO), and verified MALAT1 expression in BPD patients by realtime q-PCR. Then the role of MALAT1 in regulating cell biology was examined by profiling dataset GSE43830. The expression of CDC6, a known antiapoptopic gene was verified in BPD patients and the alveolar epithelial cell line A549 cells in which MALAT1 was knocked down. Cell apoptosis was determined by FACS using PI/Annexin-V staining.
Results:
The expression of MALAT1 was significantly evaluated in lung tissues of BPD mice at day 14 and day 29 compared to WT (P < 0.05). In consistent with mRNA array profiling analysis, MALAT1 expression level in blood samples from preterm infants with BPD was significantly increased. Bioinformative data analysis of MALAT1 knockdown in WI-38 cells showed various differentially expressed genes were found enriched in apoptosis related pathway. Down-regulation of antiapoptopic gene, CDC6 expression was further verified by q-PCR result. PI/Annexin-V apoptisis assay results showed that MALAT1 knocked down in the alveolar epithelial cell line (A549) promotes cell apoptosis.
Conclusions:
In our study, we found that up-regulation of lncRNA MALAT1 could protect preterm infants with BPD by inhibiting cell apoptosis. These data provide novel insights into MALAT1 regulation which may be relevant to cell fate and shed light on BPD prevention and treatment.
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