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A Complete Pipeline for Isolating and Sequencing MicroRNAs, and Analyzing Them Using Open Source Tools
Published on: August 21, 2019
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MicroRNA expression profiling involved in MC-LR-induced hepatotoxicity using high-throughput sequencing analysis
Shu Yang1, Lv Chen1, Cong Wen1
1a Department of Occupational and Environmental Health , Xiangya School of Public Health, Central South University , Changsha , Hunan , China.
Journal of Toxicology and Environmental Health. Part A
|December 22, 2017
Summary
Microcystin-LR (MC-LR) causes liver damage by altering microRNA (miRNA) expression. Key miRNAs like miR-451a, miR-4521, and miR-15b-3p are implicated in MC-LR-induced hepatotoxicity.
Area of Science:
- Toxicology
- Molecular Biology
- Genetics
Background:
- Microcystin-LR (MC-LR) is a prevalent cyanotoxin causing significant hepatotoxicity.
- The precise molecular mechanisms of MC-LR-induced liver damage remain unclear.
- MicroRNAs (miRNAs) regulate crucial cellular processes and stress responses.
Purpose of the Study:
- To investigate the role of miRNAs in MC-LR-induced liver damage.
- To profile miRNA expression changes in a human liver cell line (HL7702) following MC-LR exposure.
Main Methods:
- Human liver cell line HL7702 was treated with varying concentrations of MC-LR.
- Protein phosphatase 2A (PP2A) activity was measured as a biomarker of toxicity.
- High-throughput sequencing was used for miRNA profiling.
- Differential miRNA expression was validated using real-time quantitative PCR (qPCR).
- Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed.
Main Results:
- MC-LR inhibited PP2A activity in a dose-dependent manner (IC50 = 4.6 μM).
- MC-LR exposure significantly altered the expression of multiple miRNAs.
- Specific miRNAs, including miR-15b-3p (upregulated), miR-4521 (downregulated), and miR-451a (differentially regulated), were identified.
- GO and KEGG analyses indicated that altered miRNAs target genes involved in development, metabolism, mTOR, Ras, Rap1, HIF-1, and cancer pathways.
Conclusions:
- MC-LR-induced hepatotoxicity is associated with significant alterations in miRNA expression profiles.
- Dysregulation of specific miRNAs, notably miR-451a, miR-4521, and miR-15b-3p, may contribute to MC-LR-mediated liver injury.

