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Updated: Feb 16, 2026

A Standardized Liquid Biopsy Preanalytical Protocol for Downstream Circulating-Free DNA Applications
Published on: September 16, 2022
Primary resistance to osimertinib due to SCLC transformation: Issue of T790M determination on liquid re-biopsy
Objectives:
EGFR T790M mutation is the most common mechanism of resistance to first-/second-generation EGFR tyrosine kinase inhibitors (TKIs) in non-small cell lung cancer (NSCLC) and could be overcome by third-generation EGFR-TKIs, such as osimertinib. Liquid biopsy, a non-invasive technique used to test the presence of the resistant mutation, may help avoiding tissue re-biopsy. However, analysing only circulating-free DNA, information about other less frequent and coexisting resistance mechanisms may remain unrevealed.
Materials And Methods:
All patients reported in this series participated in the ASTRIS trial, a real world treatment study testing the efficacy of osimertinib (80mg os die) in advanced T790M-positive NSCLC progressed to prior EGFR-TKI. Patients were considered eligible to osimertinib if T790M positive on tissue or plasma samples. In our patients, EGFR molecular testing on blood sample was conducted with digital droplet PCR (ddPCR).
Results:
We report our experience of five patients treated with osimertinib after T790M detection on liquid biopsy that presented a disease progression at first tumor assessment mediated by SCLC transformation, as evidenced at tissue re-biopsies. All patients showed low ratio T790M/activating mutation in the blood before osimertinib (lower than 0.03). For three patients, EGFR mutational analysis was T790M-negative when re-assessed by using a less sensitive method (therascreen®) on the same liquid biopsy sample analysed by ddPCR before osimertinib therapy.
Conclusion:
Although liquid biopsy is a relevant tool to diagnose T790M presence in NSCLC patients resistant to EGFR-TKI, in case of a low ratio T790M/activating mutation, tissue biopsy should be considered to exclude the presence of SCLC transformation and/or other concomitant resistance mechanisms.
Insights
Liquid biopsy can detect EGFR T790M mutations in non-small cell lung cancer (NSCLC) for osimertinib treatment. However, low T790M ratios may indicate small cell lung cancer transformation, requiring tissue biopsy.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- The T790M mutation is a key resistance mechanism to EGFR tyrosine kinase inhibitors (TKIs) in non-small cell lung cancer (NSCLC).
- Third-generation EGFR-TKIs like osimertinib can overcome T790M-mediated resistance.
- Liquid biopsy offers a non-invasive method for detecting resistance mutations, potentially avoiding tissue re-biopsy.
Observation:
- This study reports on five NSCLC patients treated with osimertinib after T790M detection via liquid biopsy.
- All patients exhibited a low ratio of T790M to activating EGFR mutations in plasma.
- Disease progression due to small cell lung cancer (SCLC) transformation was confirmed by tissue re-biopsy in all patients.
Findings:
- Liquid biopsy is valuable for identifying T790M mutations in NSCLC patients.
- A low T790M/activating mutation ratio in liquid biopsy samples may suggest alternative resistance mechanisms.
- SCLC transformation was observed in patients with low T790M ratios despite initial T790M detection.
Implications:
- Tissue biopsy may be necessary when liquid biopsy shows a low T790M ratio to rule out SCLC transformation.
- Relying solely on liquid biopsy may miss critical coexisting resistance mechanisms in NSCLC.
- Accurate detection of resistance mechanisms is crucial for effective NSCLC treatment selection.
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