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Related Experiment Video

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Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids
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FilTer BaSe: A web accessible chemical database for small compound libraries.

Baban S Kolte1, Sanjay R Londhe1, Bhushan R Solanki2

  • 1Bioinformatics Centre, Savitribai Phule Pune University, Pune, 411007, India.

Journal of Molecular Graphics & Modelling
|January 13, 2018
PubMed
Summary
This summary is machine-generated.

This study introduces FilTer BaSe, an open-source chemoinformatics platform simplifying drug discovery. It offers pre-filtered compound libraries and a searchable database, reducing time and cost for researchers.

Keywords:
BioinformaticsChemoinformaticsCompound librariesDrug discoveryFilTer BaSeSubstructure searchingVirtual screening

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Area of Science:

  • Chemoinformatics
  • Drug Discovery
  • Computational Chemistry

Background:

  • Screening large chemical libraries is crucial for identifying novel drug agents.
  • In silico virtual screening is an initial step, but filtering compounds is time-consuming and resource-intensive.
  • Current filtering methods pose significant obstacles for academic drug discovery projects due to cost and expertise requirements.

Purpose of the Study:

  • To present FilTer BaSe, an open-source chemoinformatics platform.
  • To provide readily usable, filtered compound libraries and a searchable database.
  • To facilitate drug discovery by reducing the burden of compound filtering.

Main Methods:

  • Development of an open-source chemoinformatics platform named FilTer BaSe.
  • Hosting fully filtered, ready-to-use compound libraries of manageable size.
  • Creating a database for efficient searching of approximately 348,000 compounds based on physicochemical and substructure properties.

Main Results:

  • FilTer BaSe provides accessible, pre-filtered compound libraries.
  • The platform includes a database for efficient chemical space exploration.
  • The resource significantly streamlines the initial stages of drug discovery.

Conclusions:

  • FilTer BaSe offers a cost-effective and efficient solution for compound library filtering.
  • The platform is expected to accelerate drug development and aid medicinal chemists.
  • Open-source resources like FilTer BaSe are vital for overcoming barriers in academic drug discovery.