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Related Concept Videos

Drug Discovery: Overview01:26

Drug Discovery: Overview

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Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
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2D NMR: Overview of Homonuclear Correlation Techniques01:16

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Homonuclear correlation spectroscopy (COSY) is a powerful technique used in Nuclear Magnetic Resonance (NMR) spectroscopy to study the correlations between nuclei of the same type within a molecule. It provides information about scalar couplings between adjacent nuclei, which helps determine connectivity and structural information. There are several COSY variants, each with its unique strengths and experimental parameters.
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2D NMR: Overview of Heteronuclear Correlation Techniques01:18

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Heteronuclear correlation spectroscopy is an analytical technique that investigates the coupling between different types of nuclei, often a proton and an X-nucleus, such as carbon-13 or nitrogen-15. This method is commonly used in nuclear magnetic resonance (NMR) spectroscopy to gain insights into complex chemical compounds' structural and compositional aspects. A typical heteronuclear correlation spectrum displays X-nucleus chemical shifts on one axis and a proton spectrum on the other...
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Drug design is a dynamic field that involves discovering and developing new medications based on specific biological targets. This process heavily relies on structure-activity relationships (SAR) and quantitative structure-activity relationships (QSAR) to guide the design and optimization of efficient drugs.
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¹³C NMR: ¹H–¹³C Decoupling01:04

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The probability of having two carbon-13 atoms next to each other is negligible because of the low natural abundance of carbon-13. Consequently, peak splitting due to carbon-carbon spin-spin coupling is not observed in spectra. However, protons up to three sigma bonds away split the carbon signal according to the n+1 rule, resulting in complicated spectra.
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The axial and equatorial protons in cyclohexane can be distinguished by performing a variable-temperature NMR experiment. In this process, except for one proton, the remaining eleven protons are replaced by deuterium. The deuterium substitution avoids the possible peak splitting caused by the spin-spin coupling between the adjacent protons. The remaining proton flips between the axial and equatorial positions.
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Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
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Current NMR Techniques for Structure-Based Drug Discovery.

Toshihiko Sugiki1, Kyoko Furuita2, Toshimichi Fujiwara3

  • 1Institute for Protein Research, Osaka University, Osaka 565-0871, Japan. sugiki@protein.osaka-u.ac.jp.

Molecules (Basel, Switzerland)
|January 13, 2018
PubMed
Summary
This summary is machine-generated.

Nuclear magnetic resonance (NMR) advances structure-based drug discovery (SBDD) by enabling detailed analysis of protein-ligand interactions. New NMR techniques improve screening and characterization of weak interactions, crucial for drug development.

Keywords:
NMR-based fragment screeningNMR-based lead optimizationfluorine-19 (19F) NMRligand-based NMRnuclear magnetic resonance (NMR)protein-based NMRprotein-protein interaction (PPI) breaker/stabilizersite-specific isotope labeling

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Area of Science:

  • Biochemistry
  • Structural Biology
  • Medicinal Chemistry

Background:

  • Nuclear magnetic resonance (NMR) is a powerful tool for structure-based drug discovery (SBDD).
  • NMR offers advantages over other methods, including direct observation of compounds and biomolecules.
  • It provides insights into protein-ligand complex dynamics and affinity, even for weak interactions.

Purpose of the Study:

  • To review current NMR techniques applicable to SBDD.
  • To highlight recent advancements in NMR measurement and sample preparation.
  • To showcase how these advances expand the potential of NMR-based SBDD.

Main Methods:

  • Review of existing NMR applications in SBDD.
  • Focus on recent progress in NMR measurement techniques.
  • Emphasis on novel sample preparation strategies for challenging targets.

Main Results:

  • Fluorine NMR (19F-NMR) screening has emerged as a key technique.
  • Structure modeling of weak protein-ligand complexes is now more feasible.
  • Site-specific isotope labeling enables characterization of difficult targets.

Conclusions:

  • Recent NMR advancements significantly enhance SBDD capabilities.
  • New techniques facilitate the study of weak interactions and complex biomolecules.
  • NMR is increasingly vital for comprehensive drug discovery efforts.