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Updated: Feb 15, 2026

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase
Published on: April 29, 2010
SLFN11 Blocks Stressed Replication Forks Independently of ATR
Junko Murai1, Sai-Wen Tang1, Elisabetta Leo1
1Developmental Therapeutics Branch and Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Abstract:
SLFN11 sensitizes cancer cells to a broad range of DNA-targeted therapies. Here we show that, in response to replication stress induced by camptothecin, SLFN11 tightly binds chromatin at stressed replication foci via RPA1 together with the replication helicase subunit MCM3. Unlike ATR, SLFN11 neither interferes with the loading of CDC45 and PCNA nor inhibits the initiation of DNA replication but selectively blocks fork progression while inducing chromatin opening across replication initiation sites. The ATPase domain of SLFN11 is required for chromatin opening, replication block, and cell death but not for the tight binding of SLFN11 to chromatin. Replication stress by the CHK1 inhibitor Prexasertib also recruits SLFN11 to nascent replicating DNA together with CDC45 and PCNA. We conclude that SLFN11 is recruited to stressed replication forks carrying extended RPA filaments where it blocks replication by changing chromatin structure across replication sites.
Insights
Schlafen-11 (SLFN11) binds to stressed DNA replication forks and blocks their progression by altering chromatin structure, enhancing cancer therapy effectiveness. This mechanism involves SLFN11
Area of Science:
- Molecular Biology
- Cancer Biology
- Genetics
Background:
- Schlafen-11 (SLFN11) is a key protein that sensitizes cancer cells to DNA-damaging chemotherapy.
- The precise mechanism by which SLFN11 enhances therapy response, particularly at the replication fork level, remains incompletely understood.
Purpose of the Study:
- To elucidate the molecular mechanism of SLFN11 action at stressed replication forks.
- To investigate the role of SLFN11 in blocking DNA replication fork progression and inducing cell death.
Main Methods:
- Utilized camptothecin and CHK1 inhibitor Prexasertib to induce replication stress in cancer cells.
- Employed techniques to analyze protein-chromatin interactions, including SLFN11 binding to RPA1 and MCM3 at replication foci.
- Investigated the functional domains of SLFN11, specifically the ATPase domain, in relation to its cellular activities.
Main Results:
- SLFN11 binds tightly to chromatin at stressed replication forks via RPA1 and MCM3.
- SLFN11 selectively blocks replication fork progression and induces chromatin opening without inhibiting replication initiation.
- The ATPase domain of SLFN11 is critical for chromatin opening, replication block, and cell death.
Conclusions:
- SLFN11 is recruited to stressed replication forks with extended RPA filaments.
- SLFN11 functions by altering chromatin structure at replication sites, leading to replication arrest and cell death.
- This mechanism highlights SLFN11 as a crucial mediator in sensitizing cancer cells to DNA-targeted therapies.
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