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Published on: August 18, 2023
A Landscape of Metabolic Variation across Tumor Types
Ed Reznik1, Augustin Luna2, Bülent Arman Aksoy3
1Marie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10065, USA; Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10065, USA.
Abstract:
Tumor metabolism is reorganized to support proliferation in the face of growth-related stress. Unlike the widespread profiling of changes to metabolic enzyme levels in cancer, comparatively less attention has been paid to the substrates/products of enzyme-catalyzed reactions, small-molecule metabolites. We developed an informatic pipeline to concurrently analyze metabolomics data from over 900 tissue samples spanning seven cancer types, revealing extensive heterogeneity in metabolic changes relative to normal tissue across cancers of different tissues of origin. Despite this heterogeneity, a number of metabolites were recurrently differentially abundant across many cancers, such as lactate and acyl-carnitine species. Through joint analysis of metabolomic data alongside clinical features of patient samples, we also identified a small number of metabolites, including several polyamines and kynurenine, which were associated with aggressive tumors across several tumor types. Our findings offer a glimpse onto common patterns of metabolic reprogramming across cancers, and the work serves as a large-scale resource accessible via a web application (http://www.sanderlab.org/pancanmet).
Insights
Cancer cells reprogram metabolism to fuel growth. This study analyzes over 900 cancer samples, revealing common metabolic shifts like lactate changes and identifying metabolites linked to aggressive tumors.
Area of Science:
- Oncology
- Metabolomics
- Bioinformatics
Background:
- Tumor cells exhibit metabolic reprogramming to support rapid proliferation and overcome growth-related stress.
- While cancer-related enzyme alterations are widely studied, the role of small-molecule metabolites (substrates/products) remains less explored.
Purpose of the Study:
- To concurrently analyze metabolomics data across diverse cancer types.
- To identify common and heterogeneous metabolic alterations in tumors compared to normal tissues.
- To correlate metabolic profiles with clinical features and tumor aggressiveness.
Main Methods:
- Development of an informatic pipeline for integrated metabolomics analysis.
- Analysis of metabolomics data from over 900 tissue samples across seven cancer types.
- Joint analysis of metabolomic data with clinical patient features.
Main Results:
- Revealed extensive heterogeneity in cancer metabolic reprogramming across different tissue origins.
- Identified recurrently differentially abundant metabolites, including lactate and acyl-carnitine species, across multiple cancer types.
- Discovered specific metabolites, such as polyamines and kynurenine, associated with tumor aggressiveness.
Conclusions:
- Cancer metabolic reprogramming displays both common patterns and significant heterogeneity.
- Metabolite profiling offers insights into tumor biology and potential biomarkers for aggressive disease.
- The study provides a large-scale, web-accessible resource for cancer metabolomics research.
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