Novel single-nucleotide variations associated with vancomycin resistance in vancomycin-intermediate Staphylococcus

Lee-Chung Lin1, Shih-Cheng Chang1,2, Mao-Cheng Ge1

  • 1Department of Laboratory Medicine, Chang Gung Memorial Hospital, Linkou, Taoyuan, Taiwan.

Insights

Prolonged vancomycin use can lead to vancomycin-intermediate Staphylococcus aureus (VISA). This study identified novel genetic variations in VISA and heterogeneous VISA strains, suggesting specific amino acid changes in FmtC, HtrA, and Upps are linked to vancomycin resistance.

Area of Science:

  • Microbiology
  • Genetics
  • Molecular Biology

Background:

  • Prolonged vancomycin treatment can induce resistance in Staphylococcus aureus, leading to vancomycin-intermediate (VISA) and heterogeneous (hVISA) strains.
  • The precise genetic mechanisms underlying VISA and hVISA development remain incompletely understood.

Purpose of the Study:

  • To investigate nucleotide sequence variations in genes associated with cell wall synthesis and two-component systems in vancomycin-sensitive (VSSA), hVISA, and VISA isolates.
  • To identify potential genetic markers associated with vancomycin resistance in Staphylococcus aureus.

Main Methods:

  • Analysis of nucleotide sequences from 30 VSSA, 41 hVISA, and 16 VISA isolates.
  • Identification and comparison of single-nucleotide variations across 12 key genes.

Main Results:

  • Twenty-nine single-nucleotide variations were identified in 12 genes.
  • Six novel variations resulted in amino acid changes: Q692E in FmtC; T278I, P306L, I311T in HtrA; and I63V, K101E in Upps.
  • Three specific amino acid variations (T278I in HtrA, K101E in Upps, Q692E in FmtC) were significantly more prevalent in hVISA and VISA isolates compared to VSSA isolates.

Conclusions:

  • The study suggests that specific amino acid substitutions in FmtC, HtrA, and Upps are associated with the development of vancomycin resistance in Staphylococcus aureus.
  • These findings contribute to understanding the genetic basis of VISA and hVISA, potentially aiding in the development of future diagnostic or therapeutic strategies.

Related Concept Videos

Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
18.6K
Nucleotide Excision Repair01:08

Nucleotide Excision Repair

Overview
41.0K
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
6.9K
What is Variation?01:14

What is Variation?

Apart from the measures of central tendency, distribution, outliers, and the changing characteristics of data with time, an important characteristic of any data set is its variation or spread. In some data sets, the data values are concentrated closely near the mean; in others, the data values are more widely spread out from the mean.
The range, standard deviation, standard error, and variance are the different measures of variation.
Range: The range is the difference between its maximum and...
18.7K
The Intermediate Value Theorem01:25

The Intermediate Value Theorem

The Intermediate Value Theorem is a foundational result in calculus that guarantees the existence of solutions within certain intervals for continuous functions. Formally, the Intermediate Value Theorem states that if a function f is continuous on the closed interval [a, b], and if N is any value between f(a) and f(b), then there exists at least one c ∈ (a, b) such that f(c) = N. This theorem is instrumental in proving the existence of roots and in analyzing the behavior of continuous...
306
Variation01:19

Variation

An important characteristic of any set of data is the variation in the data. In some data sets, the data values are concentrated closely near the mean; in other data sets, the data values are more widely spread out from the mean. The most common measure of variation, or spread, is the standard deviation, which is the square root of variance.
When independent and dependent variables are plotted on a scatter plot, the slope of a line is a value that describes the rate of change between the two...
8.1K