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Updated: Feb 14, 2026

Describing a Transcription Factor Dependent Regulation of the MicroRNA Transcriptome
Published on: June 15, 2016
The MicroRNA
Shao-Yao Ying1, Donald C Chang2, Shi-Lung Lin3
1Department of Integrative Anatomical Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA. sying@usc.edu.
Abstract:
MicroRNAs (miRNAs), widely distributed, small regulatory RNA genes, target both messenger RNA (mRNA) degradation and suppression of protein translation based on sequence complementarity between the miRNA and its targeted mRNA. Different names have been used to describe various types of miRNA. During evolution, RNA retroviruses or transgenes invaded the eukaryotic genome and were inserted itself in the noncoding regions of DNA, conceivably acting as transposon-like jumping genes, providing defense from viral invasion and fine-tuning of gene expression as a secondary level of gene modulation in eukaryotes. When a transposon is inserted in the intron, it becomes an intronic miRNA, taking advantage of the protein synthesis machinery, i.e., mRNA transcription and splicing, as a means for processing and maturation. MiRNAs have been found to play an important, but not life-threatening, role in embryonic development. They might play a pivotal role in diverse biological systems in various organisms, facilitating a quick response and accurate plotting of body physiology and structures. Based on these unique properties, manufactured intronic miRNAs have been developed for in vitro evaluation of gene function, in vivo gene therapy, and generation of transgenic animal models. The biogenesis of miRNAs, circulating miRNAs, miRNAs and cancer, iPSCs, and heart disease are presented in this chapter, highlighting some recent studies on these topics.
Insights
Intronic microRNAs (miRNAs) are small regulatory RNAs derived from transposons within introns. These intronic miRNAs leverage cellular machinery for maturation and play roles in development and gene regulation.
Area of Science:
- Molecular Biology
- Genetics
- Developmental Biology
Background:
- MicroRNAs (miRNAs) are small regulatory RNA molecules.
- They regulate gene expression by targeting messenger RNA (mRNA).
- Transposons, including retroviruses and transgenes, have integrated into eukaryotic genomes.
Purpose of the Study:
- To explore the origin and function of intronic microRNAs (miRNAs).
- To discuss the role of intronic miRNAs in gene regulation and biological systems.
- To highlight applications of engineered intronic miRNAs.
Main Methods:
- Review of existing literature on miRNA biogenesis and function.
- Analysis of the evolutionary integration of transposons into host genomes.
- Discussion of experimental applications of intronic miRNAs.
Main Results:
- Intronic miRNAs originate from transposon sequences inserted into introns.
- These miRNAs utilize the host cell's mRNA transcription and splicing machinery for processing.
- Intronic miRNAs are implicated in embryonic development and physiological regulation.
Conclusions:
- Intronic miRNAs represent a unique class of regulatory RNAs with evolutionary origins in transposons.
- They offer potential for gene function studies, gene therapy, and creating animal models.
- Further research into miRNAs, including circulating and intronic types, is crucial for understanding various diseases.
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