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Updated: Feb 14, 2026

An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations
Published on: November 3, 2010
Allele-Specific Chromatin Recruitment and Therapeutic Vulnerabilities of ESR1 Activating Mutations
Rinath Jeselsohn1, Johann S Bergholz2, Matthew Pun3
1Center for Functional Cancer Epigenetics, Dana Farber Cancer Institute, Boston, MA 02210, USA; Department of Medical Oncology, Dana Farber Cancer Institute, Boston, MA 02210, USA; Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02210, USA.
Abstract:
Estrogen receptor α (ER) ligand-binding domain (LBD) mutations are found in a substantial number of endocrine treatment-resistant metastatic ER-positive (ER+) breast cancers. We investigated the chromatin recruitment, transcriptional network, and genetic vulnerabilities in breast cancer models harboring the clinically relevant ER mutations. These mutants exhibit both ligand-independent functions that mimic estradiol-bound wild-type ER as well as allele-specific neomorphic properties that promote a pro-metastatic phenotype. Analysis of the genome-wide ER binding sites identified mutant ER unique recruitment mediating the allele-specific transcriptional program. Genetic screens identified genes that are essential for the ligand-independent growth driven by the mutants. These studies provide insights into the mechanism of endocrine therapy resistance engendered by ER mutations and potential therapeutic targets.
Insights
Mutations in estrogen receptor alpha (ER) drive endocrine therapy resistance in metastatic ER-positive breast cancer. These ER mutants promote cancer growth and metastasis through unique genetic vulnerabilities and transcriptional programs.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Estrogen receptor alpha (ER) mutations in the ligand-binding domain (LBD) are implicated in endocrine therapy resistance in metastatic ER-positive breast cancer.
- Understanding the molecular mechanisms of these mutations is crucial for developing effective treatment strategies.
Purpose of the Study:
- To investigate the chromatin recruitment, transcriptional network, and genetic vulnerabilities associated with clinically relevant ER mutations.
- To elucidate how these ER mutants contribute to endocrine therapy resistance and a pro-metastatic phenotype.
Main Methods:
- Utilized breast cancer models harboring specific ER mutations.
- Performed genome-wide ER binding site analysis to identify unique recruitment patterns.
- Conducted genetic screens to identify essential genes for mutant ER-driven growth.
Main Results:
- ER mutants demonstrated ligand-independent functions mimicking estradiol-bound wild-type ER.
- Identified allele-specific neomorphic properties promoting a pro-metastatic phenotype.
- Discovered unique ER mutant recruitment mediating allele-specific transcriptional programs and identified essential genes for their growth.
Conclusions:
- ER mutations can confer ligand-independent activity and neomorphic functions, driving endocrine therapy resistance.
- These findings reveal the mechanisms of resistance and highlight potential therapeutic targets for metastatic ER-positive breast cancer.
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