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Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen
Gabriela F Persinoti1, Diego A Martinez2, Wenjun Li3
1Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Brazil 14049-900.
Abstract:
Dermatophytes include fungal species that infect humans, as well as those that also infect other animals or only grow in the environment. The dermatophyte species Trichophyton rubrum is a frequent cause of skin infection in immunocompetent individuals. While members of the T. rubrum species complex have been further categorized based on various morphologies, their population structure and ability to undergo sexual reproduction are not well understood. In this study, we analyze a large set of T. rubrum and T. interdigitale isolates to examine mating types, evidence of mating, and genetic variation. We find that nearly all isolates of T. rubrum are of a single mating type, and that incubation with T. rubrum "morphotype" megninii isolates of the other mating type failed to induce sexual development. While the region around the mating type locus is characterized by a higher frequency of SNPs compared to other genomic regions, we find that the population is remarkably clonal, with highly conserved gene content, low levels of variation, and little evidence of recombination. These results support a model of recent transition to asexual growth when this species specialized to growth on human hosts.
Insights
The study found that the common skin fungus Trichophyton rubrum exists primarily as a single mating type, suggesting it has recently transitioned to asexual reproduction. This limits its genetic diversity and ability to adapt.
Area of Science:
- Mycology
- Genetics
- Evolutionary Biology
Background:
- Dermatophytes are fungi that cause skin infections in humans and animals.
- Trichophyton rubrum is a prevalent dermatophyte species.
- The population structure and sexual reproduction capabilities of T. rubrum are poorly understood.
Purpose of the Study:
- To investigate the mating types, evidence of mating, and genetic variation within T. rubrum and T. interdigitale.
- To understand the population genetics and reproductive strategies of T. rubrum.
Main Methods:
- Analysis of a large collection of T. rubrum and T. interdigitale isolates.
- Examination of mating type distribution.
- Assessment of genetic variation and recombination patterns.
Main Results:
- Nearly all T. rubrum isolates possess a single mating type.
- Experimental attempts to induce sexual reproduction with T. rubrum morphotype megninii failed.
- The T. rubrum population exhibits clonal characteristics with low genetic variation and minimal recombination, despite higher SNP frequency near the mating type locus.
Conclusions:
- The findings support a recent evolutionary shift towards asexual reproduction in T. rubrum.
- Specialization to human hosts may have driven this transition to asexual growth.
- The limited genetic diversity may impact the adaptability of T. rubrum.
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