Is ZFP57 binding to H19/IGF2:IG-DMR affected in Silver-Russell syndrome?

Angela Sparago1, Flavia Cerrato1, Andrea Riccio1,2

  • 11Dipartimento di Scienze e Tecnologie Ambientali Biologiche e Farmaceutiche, Università degli Studi della Campania "Luigi Vanvitelli", Caserta, Italy.

Clinical Epigenetics
|February 28, 2018
PubMed
Abstract

Insights

Deletions in the H19/IGF2:IG-DMR region can cause Silver-Russell syndrome (SRS) by disrupting ZFP57 binding and leading to loss of methylation (LOM). The extent of deletion determines the impact on DNA methylation and phenotype.

Area of Science:

  • Genetics
  • Epigenetics
  • Developmental Biology

Background:

  • Loss of paternal methylation (LOM) at the H19/IGF2:IG-DMR is linked to Silver-Russell syndrome (SRS).
  • Internal deletions within H19/IGF2:IG-DMR are associated with LOM and SRS on paternal inheritance.
  • Previously described deletions causing Beckwith-Wiedemann syndrome (BWS) on maternal inheritance showed normal methylation and phenotype upon paternal inheritance.

Purpose of the Study:

  • To investigate the role of ZFP57 binding in maintaining H19/IGF2 imprinting.
  • To determine if deletions affecting ZFP57 binding sites cause LOM and SRS.

Main Methods:

  • Comparative analysis of H19/IGF2:IG-DMR deletion extents with ZFP57 binding profiles.
  • Hypothesizing the impact of deletions based on interference with ZFP57 binding.

Main Results:

  • Deletions significantly affecting ZFP57 binding regions result in LOM and SRS.
  • Deletions preserving ZFP57 binding sites do not alter methylation or phenotype.

Conclusions:

  • The effect of H19/IGF2:IG-DMR deletions on DNA methylation and phenotype is dependent on ZFP57 binding.
  • Disruption of ZFP57 binding on the paternal chromosome by deletions leads to SRS with LOM.

Related Concept Videos

The Equilibrium Binding Constant and Binding Strength02:18

The Equilibrium Binding Constant and Binding Strength

The equilibrium binding constant (Kb) quantifies the strength of a protein-ligand interaction. Kb can be calculated as follows when the reaction is at equilibrium:
15.2K
The Equilibrium Binding Constant and Binding Strength02:18

The Equilibrium Binding Constant and Binding Strength

10.1K
Ligand Binding Sites02:40

Ligand Binding Sites

Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
15.2K
Conserved Binding Sites01:49

Conserved Binding Sites

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
5.2K
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
5.6K
Nuclear Binding Energy02:13

Nuclear Binding Energy

The difference between the calculated and experimentally measured masses is known as the mass defect of the atom. In the case of helium-4, the mass defect indicates a “loss” in mass of 4.0331 amu – 4.0026 amu = 0.0305 amu. The loss in mass accompanying the formation of an atom from protons, neutrons, and electrons is due to the conversion of that mass into energy that is evolved as the atom forms. The nuclear binding energy is the energy produced when the atoms’ nucleons are bound...
14.8K