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Published on: September 26, 2025
Ligand-Based Pharmacophore Screening Strategy: a Pragmatic Approach for Targeting HER Proteins
1Department of Biotechnology, School of Bio Sciences and Technology, Vellore Institue of Technology, Vellore, Tamil Nadu, 632014, India.
Abstract:
Targeting ErbB family of receptors is an important therapeutic option, because of its essential role in the broad spectrum of human cancers, including non-small cell lung cancer (NSCLC). Therefore, in the present work, considerable effort has been made to develop an inhibitor against HER family proteins, by combining the use of pharmacophore modelling, docking scoring functions, and ADME property analysis. Initially, a five-point pharmacophore model was developed using known HER family inhibitors. The generated model was then used as a query to screen a total of 468,880 compounds of three databases namely ZINC, ASINEX, and DrugBank. Subsequently, docking analysis was carried out to obtain hit molecules that could inhibit the HER receptors. Further, analysis of GLIDE scores and ADME properties resulted in one hit namely BAS01025917 with higher glide scores, increased CNS involvement, and good pharmaceutically relevant properties than reference ligand, afatinib. Furthermore, the inhibitory activity of the lead compounds was validated by performing molecular dynamic simulations. Of note, BAS01025917 was found to possess scaffolds with a broad spectrum of antitumor activity. We believe that this novel hit molecule can be further exploited for the development of a pan-HER inhibitor with low toxicity and greater potential.
Insights
Researchers developed a novel inhibitor, BAS01025917, targeting human epidermal growth factor receptor (HER) family proteins for cancer therapy. This potential pan-HER inhibitor shows promise for treating non-small cell lung cancer (NSCLC) with improved properties.
Area of Science:
- Oncology
- Medicinal Chemistry
- Computational Biology
Background:
- The ErbB receptor family plays a crucial role in various human cancers, including non-small cell lung cancer (NSCLC).
- Targeting ErbB receptors is a key therapeutic strategy, necessitating the development of novel inhibitors.
Purpose of the Study:
- To design and identify a novel inhibitor targeting the human epidermal growth factor receptor (HER) family.
- To discover a potential pan-HER inhibitor with favorable pharmaceutical properties and broad antitumor activity.
Main Methods:
- Development of a five-point pharmacophore model based on known HER inhibitors.
- Virtual screening of over 468,000 compounds from ZINC, ASINEX, and DrugBank databases.
- Docking analysis, ADME property evaluation, and molecular dynamic simulations were employed to identify and validate lead compounds.
Main Results:
- A novel hit molecule, BAS01025917, was identified with superior glide scores and pharmaceutically relevant properties compared to afatinib.
- BAS01025917 demonstrated potential for increased central nervous system (CNS) involvement and broad-spectrum antitumor activity.
- Molecular dynamic simulations validated the inhibitory potential of the lead compound.
Conclusions:
- BAS01025917 represents a promising novel scaffold for developing a low-toxicity, potent pan-HER inhibitor.
- Further investigation of BAS01025917 could lead to advanced therapeutic options for HER-driven cancers like NSCLC.
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