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Conserved OprF as a Selective Immunogen against Pseudomonas aeruginosa
Ehsan Kazemi Moghaddam1, Parviz Owlia2, Abolfazl Jahangiri3
1Dept. of Microbiology, Faculty of Medicine, Shahed University, Tehran, Iran.
Background & Objectives:
Due to the importance of Pseudomonas aeruginosa in severe inpatient infections and high mortality, the need for an efficient vaccine against these bacteria is increasing. In this regard, the general outer membrane porin of the most problematic microorganism P. aeruginosa, outer membrane protein F (OprF), is a good vaccine candidate.
Methods:
The databank of NCBI was used to retrieve protein sequences recorded for OprF in P. aeruginosa.The current study aimed at investigating the conservation of the OprF in 150 reference sequences, clinical, and environmental strains of P. aeruginosa from different countries via bioinformatic tools.T-COFFEE and PRALINE software were used for alignment.
Results:
Of these, 134 strains were isolated from clinical specimens and other strains from environmental samples. Evaluation of alignment by the mentioned software clearly showed that this protein was conserved. Antigenicity and grand average of hydropathicity were favorable.
Conclusion:
Conservation of OprF in all pathogenic and environmental strains of P. aeruginosa indicated that it can be considered as a good immunogen; however, the protectivity of OprF should be validated experimentally.
Insights
Outer membrane protein F (OprF) from Pseudomonas aeruginosa is conserved across clinical and environmental strains. This finding supports OprF as a potential vaccine candidate against P. aeruginosa infections.
Area of Science:
- Microbiology
- Immunology
- Bioinformatics
Background:
- Pseudomonas aeruginosa is a significant cause of severe inpatient infections with high mortality rates.
- There is a growing need for effective vaccines against P. aeruginosa.
Purpose of the Study:
- To investigate the conservation of outer membrane protein F (OprF) in Pseudomonas aeruginosa.
- To evaluate OprF as a potential vaccine candidate.
Main Methods:
- Retrieved OprF protein sequences for P. aeruginosa from the NCBI database.
- Analyzed 150 reference, clinical, and environmental P. aeruginosa strains using bioinformatic tools.
- Utilized T-COFFEE and PRALINE software for sequence alignment.
Main Results:
- OprF was found to be conserved across all 150 analyzed P. aeruginosa strains.
- 134 strains were clinical isolates, with the remainder from environmental samples.
- The protein exhibited favorable antigenicity and hydropathicity profiles.
Conclusions:
- The high conservation of OprF in pathogenic and environmental strains suggests its potential as a broad-spectrum immunogen.
- Further experimental validation is required to confirm the protective efficacy of OprF.
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