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Published on: February 10, 2022
Identification of Streptococcus mitis321A vaccine antigens based on reverse vaccinology
Qiao Zhang1, Kexiong Lin1, Changzheng Wang1
1Institute of Respiratory Disease, Xinqiao Hospital of Third Military Medical University, Chongqing 400037, P.R. China.
Abstract:
Streptococcus mitis (S. mitis) may transform into highly pathogenic bacteria. The aim of the present study was to identify potential antigen targets for designing an effective vaccine against the pathogenic S. mitis321A. The genome of S. mitis321A was sequenced using an Illumina Hiseq2000 instrument. Subsequently, Glimmer 3.02 and Tandem Repeat Finder (TRF) 4.04 were used to predict genes and tandem repeats, respectively, with DNA sequence function analysis using the Basic Local Alignment Search Tool (BLAST) in the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Cluster of Orthologous Groups of proteins (COG) databases. Putative gene antigen candidates were screened with BLAST ahead of phylogenetic tree analysis. The DNA sequence assembly size was 2,110,680 bp with 40.12% GC, 6 scaffolds and 9 contig. Consequently, 1,944 genes were predicted, and 119 TRF, 56 microsatellite DNA, 10 minisatellite DNA and 154 transposons were acquired. The predicted genes were associated with various pathways and functions concerning membrane transport and energy metabolism. Multiple putative genes encoding surface proteins, secreted proteins and virulence factors, as well as essential genes were determined. The majority of essential genes belonged to a phylogenetic lineage, while 321AGL000129 and 321AGL000299 were on the same branch. The current study provided useful information regarding the biological function of the S. mitis321A genome and recommends putative antigen candidates for developing a potent vaccine against S. mitis.
Insights
This study sequenced the Streptococcus mitis 321A genome to find vaccine targets. Researchers identified potential surface proteins and virulence factors for developing a new S. mitis vaccine.
Area of Science:
- Genomics
- Vaccinology
- Microbial Pathogenesis
Background:
- Streptococcus mitis can become pathogenic.
- Developing vaccines against pathogenic S. mitis requires identifying key antigen targets.
Purpose of the Study:
- To identify potential antigen targets for an effective vaccine against pathogenic Streptococcus mitis 321A.
- To analyze the genome of S. mitis 321A for vaccine candidate identification.
Main Methods:
- Whole-genome sequencing of S. mitis 321A using Illumina Hiseq2000.
- Gene and tandem repeat prediction using Glimmer 3.02 and TRF 4.04.
- Functional annotation via BLAST against KEGG and COG databases; phylogenetic analysis.
Main Results:
- Genome assembly: 2,110,680 bp, 40.12% GC, 6 scaffolds, 9 contigs.
- 1,944 genes predicted, including 119 TRFs, 56 microsatellites, 10 minisatellites, and 154 transposons.
- Identified genes encoding surface proteins, secreted proteins, virulence factors, and essential genes crucial for vaccine development.
Conclusions:
- The study provides genomic insights into S. mitis 321A's biological functions.
- Identified putative antigen candidates for a potent S. mitis vaccine.
- Genomic data supports the development of targeted S. mitis vaccines.
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