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Updated: Feb 11, 2026

Conventional BODIPY Conjugates for Live-Cell Super-Resolution Microscopy and Single-Molecule Tracking
Published on: June 8, 2020
Fluorescent BODIPY-Anionic Boron Cluster Conjugates as Potential Agents for Cell Tracking.
Mahdi Chaari1,2, Nerea Gaztelumendi3, Justo Cabrera-González1
1Instituto de Ciencia de Materiales de Barcelona (ICMAB-CSIC) , Campus de la UAB , E-08193 Bellaterra , Barcelona , Spain.
Novel fluorescent BODIPY-anionic boron cluster conjugates were synthesized and tested for biomedical applications. These compounds show excellent cellular uptake and biocompatibility, making them promising for in vitro cell tracking.
Area of Science:
- Materials Chemistry
- Supramolecular Chemistry
- Bioinorganic Chemistry
Background:
- Boron clusters offer unique electronic and structural properties.
- BODIPY dyes are known for their fluorescence and photostability.
- Functionalizing BODIPY dyes with boron clusters could lead to novel probes.
Purpose of the Study:
- To synthesize novel fluorescent BODIPY-anionic boron cluster conjugates.
- To evaluate their photoluminescence, cytotoxicity, and cellular uptake.
- To explore their potential for biomedical applications, particularly cell tracking.
Main Methods:
- Synthesis of BODIPY-anionic boron cluster conjugates using meso-(4-hydroxyphenyl)-4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY 4).
- Characterization of structure and photoluminescence properties, including emission fluorescent quantum yields.
- In vitro assessment of cytotoxicity and cellular uptake in HeLa cells at varying concentrations.
Main Results:
- Successful synthesis of BODIPY-anionic boron cluster conjugates with [B12H12]2-, [3,3'-Co(1,2-C2B9H11)2]-, and [3,3'-Fe(1,2-C2B9H11)2]- anions.
- Luminescent properties were largely retained, with quantum yields between 3-6%.
- Compounds showed no cytotoxicity at low concentrations and excellent cellular internalization, particularly compounds 7 and 8.
Conclusions:
- The synthesized BODIPY-anionic boron cluster conjugates are the first of their kind for fluorescent dye applications.
- Functionalization with boron clusters enhanced cellular permeability of the parent BODIPY.
- Compounds 7 and 8 demonstrate significant potential for in vitro cell tracking due to their uptake, fluorescence, and biocompatibility.
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