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Related Concept Videos

Stream Function01:20

Stream Function

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In two-dimensional incompressible fluid flow, the continuity equation is essential for ensuring mass conservation, meaning that any change in fluid entering or exiting a region is balanced by a corresponding change elsewhere. For incompressible flow, where density remains constant, this requirement simplifies to the condition that the divergence of the velocity field must be zero. Mathematically, this is expressed as,
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Sample Preparation for Analysis: Advanced Techniques01:08

Sample Preparation for Analysis: Advanced Techniques

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Accurate analysis of complex samples often requires advanced preparation techniques to achieve reliable and reproducible results. Samples containing inorganic or organic materials can be challenging to dissolve or decompose effectively. Standard sample preparation methods include acid digestion, fusion, dry ashing, and wet digestion.
Acid digestion with strong acids is commonly used to dissolve inorganic materials that are insoluble (do not dissolve) in water. This method can be useful for...
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Dynamic Equilibrium02:20

Dynamic Equilibrium

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A reversible chemical reaction represents a chemical process that proceeds in both forward (left to right) and reverse (right to left) directions. When the rates of the forward and reverse reactions are equal, the concentrations of the reactant and product species remain constant over time and the system is at equilibrium. A special double arrow is used to emphasize the reversible nature of the reaction. The relative concentrations of reactants and products in equilibrium systems vary greatly;...
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Steady Flow of a Fluid Stream01:27

Steady Flow of a Fluid Stream

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Consider a control volume, such as a pipe with solid boundaries, through which fluid flows and changes direction due to the impulse exerted by the resulting force from the pipe walls. In steady flow, the mass of fluid entering the control volume at a given time, t, with velocity v1, is equal to the mass leaving after infinitesimal time dt, with velocity v2.
During this process, the momentum of the fluid within the control volume remains constant over the time interval dt. By applying the...
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Molecular Models02:00

Molecular Models

43.9K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
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Overview of Advanced Functional Groups02:22

Overview of Advanced Functional Groups

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Functional groups are groups of atoms with specific chemical properties that occur within organic molecules and are sometimes denoted as “R”. Functional groups can “functionalize” a compound by enabling it to adopt different physical and chemical properties.
Types of Advanced Functional Groups
The table below summarizes some of the major functional groups in organic chemistry.
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Related Experiment Video

Updated: Feb 11, 2026

Evaluating the Impact of Hydraulic Fracturing on Streams using Microbial Molecular Signatures
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Evaluating the Impact of Hydraulic Fracturing on Streams using Microbial Molecular Signatures

Published on: April 4, 2021

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StreaMD: Advanced analysis of molecular dynamics using R.

Maximilian J Dombrowsky1, Sven Jager1, Benjamin Schiller2

  • 1Computational Biology and Simulation, Department of Biology, TU Darmstadt, Germany.

Journal of Computational Chemistry
|April 18, 2018
PubMed
Summary

The streaMD package integrates Gromacs trajectory analysis with R, offering faster and deeper insights than standard methods. This molecular simulation tool enhances data analysis for complex biological problems like RNA design.

Area of Science:

  • Computational chemistry
  • Bioinformatics
  • Molecular dynamics

Background:

  • Molecular simulation generates vast data, challenging efficient analysis.
Keywords:
GromacsRRcppdynamic graphsmolecular dynamicsrJava

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  • Standard methods like RMSF offer limited physical insight.
  • Gromacs is a widely used molecular simulation suite.