Enhanced JBrowse plugins for epigenomics data visualization
Related Experiment Video
Updated: Feb 11, 2026

Pattern-based Search of Epigenomic Data Using GeNemo
Published on: October 8, 2017
Brigitte T Hofmeister1, Robert J Schmitz2
1Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA. bth29393@uga.edu.
Background:
New sequencing techniques require new visualization strategies, as is the case for epigenomics data such as DNA base modifications, small non-coding RNAs, and histone modifications.
Results:
We present a set of plugins for the genome browser JBrowse that are targeted for epigenomics visualizations. Specifically, we have focused on visualizing DNA base modifications, small non-coding RNAs, stranded read coverage, and sequence motif density. Additionally, we present several plugins for improved user experience such as configurable, high-quality screenshots.
Conclusions:
In visualizing epigenomics with traditional genomics data, we see these plugins improving scientific communication and leading to discoveries within the field of epigenomics.
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