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Updated: Feb 11, 2026

Shotgun Lipidomics of Rodent Tissues
Published on: November 18, 2022
Tissue storage affects lipidome profiling in comparison to in vivo microsampling approach
Anna Roszkowska1,2, Miao Yu1, Vincent Bessonneau1
1Department of Chemistry, University of Waterloo, Waterloo, ON, Canada.
In vivo solid-phase microextraction (SPME) offers a superior method for analyzing fish muscle lipids compared to ex vivo techniques. This low-invasive approach reveals a richer lipid profile, including bioactive lipids, unaffected by storage.
Area of Science:
- Analytical Chemistry
- Marine Biology
- Biochemistry
Background:
- Lipid profiling is crucial for understanding fish muscle quality and health.
- Traditional extraction methods can be destructive and may alter lipid profiles during sample processing and storage.
- In vivo sampling offers a potential alternative for minimally invasive lipid analysis.
Purpose of the Study:
- To evaluate the efficacy of in vivo solid-phase microextraction (SPME) for analyzing lipid profiles in living fish muscle.
- To compare the lipid profiles obtained via in vivo SPME with those from ex vivo SPME and solid-liquid extraction (SLE) on stored samples.
- To assess the impact of storage on lipid profiles and highlight the advantages of in vivo sampling.
Main Methods:
- Low-invasive in vivo SPME using mixed-mode fibers inserted into fish muscle for 20-minute extractions.
- Desorption of analytes from SPME fibers using an optimized solvent mixture.
- Comparison of in vivo SPME results with ex vivo SPME and SLE performed on fish muscle stored for one year.
Main Results:
- In vivo SPME detected a significantly higher number of molecular features compared to ex vivo SPME and SLE.
- Ex vivo analysis of stored samples showed a tenfold decrease in detected molecular features.
- In vivo microsampling identified distinct classes of bioactive lipids, such as fatty acyls, absent in ex vivo/SLE analyses.
Conclusions:
- In vivo SPME is a highly advantageous technique for comprehensive lipid profiling of fish muscle.
- Storage significantly alters the unbound lipid fraction, making in vivo sampling critical for accurate assessment.
- This method preserves the integrity of the lipid profile, revealing bioactive compounds missed by traditional approaches.
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