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In many practical and theoretical contexts, the exact value of a definite integral may be inaccessible. This limitation typically arises when the antiderivative of a function is either unknown or cannot be expressed in a closed mathematical form. Alternatively, it can occur when a function is defined not by a formula but by a finite set of empirical data points, such as those collected during experiments. In these cases, approximate integration techniques provide a valuable solution.One of the...
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Mapping Absolute DNA Density in Cell Nuclei using Single-molecule Localization Microscopy
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Local Derivative-Free Approximation of Computationally Expensive Posterior Densities.

Nikolay Bliznyuk1, David Ruppert2, Christine A Shoemaker3

  • 1Assistant Professor, Department of Statistics, University of Florida, Gainesville, FL 32611.

Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America
|June 5, 2018
PubMed
Summary

We introduce GRIMA, a new algorithm for Bayesian inference that efficiently approximates complex posterior densities. This derivative-free method reduces computational cost by focusing on high-probability regions, making MCMC more accessible.

Keywords:
Bayesian calibrationComputer experimentsGroundwater modelingInverse problemsMarkov chain Monte CarloRadial basis functionsUncertainty analysis

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Area of Science:

  • Computational Statistics
  • Bayesian Inference

Background:

  • Markov chain Monte Carlo (MCMC) methods are computationally intensive for expensive posterior density evaluations.
  • Existing global approximation methods can waste computational resources on low-probability regions.

Purpose of the Study:

  • To develop a derivative-free algorithm (GRIMA) for accurate approximation of posterior densities.
  • To improve computational efficiency in Bayesian inference by focusing on high-probability regions.

Main Methods:

  • GRIMA employs a local interpolation approach over the high-probability density (HPD) region.
  • It iteratively refines a surrogate posterior using sequential knot selection and MCMC sampling.
  • The algorithm does not require derivatives of the posterior density.

Main Results:

  • GRIMA accurately approximates general unnormalized posterior densities.
  • Simulation experiments demonstrate effectiveness across various density characteristics (dependence, skewness, multimodality).
  • The method was successfully applied to calibrate a nonlinear regression model in a watershed case study.

Conclusions:

  • GRIMA offers a computationally efficient and accurate alternative for Bayesian inference with expensive posterior evaluations.
  • The derivative-free nature and focus on HPD regions enhance its applicability.
  • This algorithm can facilitate the use of MCMC in complex, real-world modeling scenarios.