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OptoBase: A Web Platform for Molecular Optogenetics.

Katja Kolar1,2, Christian Knobloch3, Hendrik Stork1

  • 1Faculty of Biology , University of Freiburg , 79104 Freiburg , Germany.

ACS Synthetic Biology
|June 19, 2018
PubMed
Summary
This summary is machine-generated.

OptoBase is a new online platform and database for molecular optogenetics, offering tools and data for researchers. It analyzes trends in optogenetics, making the field more accessible.

Keywords:
databaseoptogenetic toolsoptogeneticsphotoreceptorsprotein switchessynthetic biology

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Area of Science:

  • Molecular Biology
  • Neuroscience
  • Biotechnology

Background:

  • Optogenetics is a powerful tool for controlling biological processes with light.
  • A centralized resource for optogenetic tools and publications is lacking.
  • Understanding trends in molecular optogenetics is crucial for future research.

Purpose of the Study:

  • To introduce OptoBase, an online platform for molecular optogenetics.
  • To provide a comprehensive, hand-annotated database of optogenetic switches and publications.
  • To offer web tools and analyze trends in the field.

Main Methods:

  • Development of a hand-annotated, ontology-supported database.
  • Integration of optogenetics-related web tools.
  • Analysis of data within the OptoBase platform.

Main Results:

  • OptoBase provides a comprehensive resource for molecular optogenetics.
  • The platform includes a curated database and functional web tools.
  • Analysis reveals current trends in molecular optogenetics research.

Conclusions:

  • OptoBase serves as a valuable resource for both expert and novice optogenetic researchers.
  • The platform facilitates tracking advancements and utilizing optogenetic tools.
  • OptoBase analysis offers insights into the evolving landscape of molecular optogenetics.