Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Author Correction: Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics.

Nature communications·2026
Same author

Human SRD5A1 as a case of gene expression indel-resistance in triple-coding region.

Genome biology·2026
Same author

Expanding the human proteome with microproteins and peptideins.

Nature·2026
Same author

Mechanism of ribosome stalling by the AMD1 C-terminal tail arrest peptide.

Science advances·2026
Same author

An expanded reference catalog of translated open reading frames for biomedical research.

Nucleic acids research·2026
Same author

Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics.

Nature communications·2026
Same journal

Protein Sequence Analysis Using the MPI Bioinformatics Toolkit.

Current protocols in bioinformatics·2020
Same journal

Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt.

Current protocols in bioinformatics·2020
Same journal

Network Building with the Cytoscape BioGateway App Explained in Five Use Cases.

Current protocols in bioinformatics·2020
Same journal

Expanding the Perseus Software for Omics Data Analysis With Custom Plugins.

Current protocols in bioinformatics·2020
Same journal

Exploring Non-Coding RNAs in RNAcentral.

Current protocols in bioinformatics·2020
Same journal

How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource.

Current protocols in bioinformatics·2020
See all related articles

Related Experiment Video

Updated: Feb 8, 2026

Identification of Fatty Acids in Bacillus cereus
08:41

Identification of Fatty Acids in Bacillus cereus

Published on: December 5, 2016

10.1K

The GWIPS-viz Browser.

Stephen J Kiniry1, Audrey M Michel1, Pavel V Baranov1

  • 1School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.

Current Protocols in Bioinformatics
|June 22, 2018
PubMed
Summary
This summary is machine-generated.

GWIPS-viz visualizes ribosome profiling (Ribo-seq) data, offering insights into translated RNA. This public browser simplifies analysis of genome-wide protein synthesis data for researchers.

Keywords:
GWIPS-vizgene expressiongenome browsermRNA-seqprotein synthesisribosome profilingtranslation

More Related Videos

An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

4.0K
Author Spotlight: Automated Lifespan Monitoring – Discovering Aging Dynamics with the Lifespan Machine
08:53

Author Spotlight: Automated Lifespan Monitoring – Discovering Aging Dynamics with the Lifespan Machine

Published on: January 26, 2024

1.7K

Related Experiment Videos

Last Updated: Feb 8, 2026

Identification of Fatty Acids in Bacillus cereus
08:41

Identification of Fatty Acids in Bacillus cereus

Published on: December 5, 2016

10.1K
An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

4.0K
Author Spotlight: Automated Lifespan Monitoring – Discovering Aging Dynamics with the Lifespan Machine
08:53

Author Spotlight: Automated Lifespan Monitoring – Discovering Aging Dynamics with the Lifespan Machine

Published on: January 26, 2024

1.7K

Area of Science:

  • Genomics
  • Molecular Biology
  • Bioinformatics

Background:

  • Ribosome profiling (Ribo-seq) is a key technique for studying protein synthesis.
  • Visualizing Ribo-seq data aids in identifying actively translated regions of the genome.
  • Existing tools often require significant user-side computational resources.

Purpose of the Study:

  • To introduce GWIPS-viz, a web-based genome browser for visualizing Ribo-seq data.
  • To provide a user-friendly platform for exploring genome-wide protein synthesis information.
  • To enable easy access and analysis of publicly available Ribo-seq and mRNA-seq data.

Main Methods:

  • Development of the GWIPS-viz browser for Ribo-seq data visualization.
  • Integration of Ribo-seq and mRNA-seq data from public repositories.
  • Implementation of features for custom track uploading and data downloading.

Main Results:

  • GWIPS-viz offers visualization of Ribo-seq data across 24 genomes.
  • Over 1885 data tracks have been generated and made available.
  • The browser eliminates the need for user-side data processing.

Conclusions:

  • GWIPS-viz provides valuable insights into genome-wide protein synthesis.
  • The platform facilitates accessible analysis of Ribo-seq data for the scientific community.
  • GWIPS-viz supports research in gene expression and translation regulation.