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Development of an Individual-Tree Basal Area Increment Model using a Linear Mixed-Effects Approach
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Analyzing mixing systems using a new generation of Bayesian tracer mixing models
Brian C Stock1, Andrew L Jackson2, Eric J Ward3
1Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.
Peerj
|June 27, 2018
Summary
MixSIAR is a new R package that unifies Bayesian tracer mixing models for ecological diet analysis. This flexible framework simplifies complex analyses and provides guidance for researchers using stable isotope data.
Area of Science:
- Ecology
- Quantitative Ecology
- Biogeochemistry
Background:
- Existing tracer mixing models present a confusing array of software with varied inputs and assumptions.
- There is a need for a unified and flexible framework for ecological mixing model analyses.
Purpose of the Study:
- Introduce MixSIAR, an open-source R package for Bayesian tracer mixing models.
- Provide guidance for implementing mixing model analyses, including data inputs, error structures, and prior specifications.
- Enhance mixing model capabilities with covariate analysis and model selection tools.
Main Methods:
- Developed MixSIAR as an inclusive, flexible Bayesian framework in R.
- Outlined practical differences in mixture data error structures and their relation to study designs.
- Described methods for establishing informative priors and discussed their influence on model outputs.
- Detailed options for source data inputs and guidance for combining sources.
- Incorporated fixed and random effects as covariates and model selection via information criteria.
Main Results:
- MixSIAR consolidates disparate mixing model tools into a single platform.
- The package offers diversified parameterizations and improved analytical capabilities.
- Demonstrated the utility of MixSIAR with a case study on alligator diet partitioning.
Conclusions:
- MixSIAR provides a unified and advanced platform for Bayesian tracer mixing model analyses.
- The framework supports researchers in ecological diet partitioning and related studies.
- Offers a foundation for future development and improvement of mixing model applications.
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