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ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
Published on: January 16, 2019
Xi-cam: a versatile interface for data visualization and analysis
Ronald J Pandolfi1, Daniel B Allan2, Elke Arenholz1
1Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, USA.
Xi-cam is an open-source platform for managing and analyzing synchrotron data. Its flexible, plugin-based design supports high-throughput processing and collaborative development across various techniques.
Area of Science:
- Materials Science
- Data Science
- Scientific Computing
Background:
- Synchrotron data analysis demands robust, high-throughput processing solutions.
- Existing platforms may lack flexibility for diverse experimental techniques and collaborative development.
Purpose of the Study:
- To introduce Xi-cam, an extensible platform for synchrotron data management, analysis, and visualization.
- To address the challenges of high-volume and high-throughput data processing in scientific research.
Main Methods:
- Xi-cam features a plugin-based graphical user interface for interactive algorithm access.
- An advanced mode allows data processing as graph-based workflows executable locally or remotely.
- Supports various data types including SAXS/WAXS/GISAXS/GIWAXS, tomography, and NEXAFS.
Main Results:
- Xi-cam provides a flexible and extensible approach to synchrotron data treatment.
- Enables efficient reduction of high-throughput data using high-performance computing.
- Facilitates cross-facility and cross-technique collaborative development for multi-modal analysis.
Conclusions:
- Xi-cam offers a powerful, open-source solution for modern synchrotron data challenges.
- Its architecture promotes collaboration and adaptability for diverse scientific needs.
- Available on GitHub, promoting accessibility and community-driven enhancement.
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