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Related Concept Videos

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Outliers are observed data points that are far from the least squares line. They have unusual values and need to be examined carefully. Though an outlier may result from erroneous data, at other times, it may hold valuable information about the population under study and should be included in the data. Hence, it is crucial to examine what causes a data point to be an outlier.
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Diffusion is a type of passive transport. In passive transport, a substance tends to move from an area of high concentration to an area of low concentration until the concentration is equal across the space. For example, take the diffusion of substances through the air. When someone opens a perfume bottle in a room filled with people, the perfume is at its highest concentration in the bottle and is at its lowest at the edges of the room. The perfume vapor will diffuse, or spread away, from the...
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Metallic solids such as crystals of copper, aluminum, and iron are formed by metal atoms. The structure of metallic crystals is often described as a uniform distribution of atomic nuclei within a “sea” of delocalized electrons. The atoms within such a metallic solid are held together by a unique force known as metallic bonding that gives rise to many useful and varied bulk properties.
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Solids in which the atoms, ions, or molecules are arranged in a definite repeating pattern are known as crystalline solids. Metals and ionic compounds typically form ordered, crystalline solids. A crystalline solid has a precise melting temperature because each atom or molecule of the same type is held in place with the same forces or energy. Amorphous solids or non-crystalline solids (or, sometimes, glasses) which lack an ordered internal structure and are randomly arranged. Substances that...
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Fast and accurate Slicewise OutLIer Detection (SOLID) with informed model estimation for diffusion MRI data.

Viljami Sairanen1, A Leemans2, C M W Tax3

  • 1Department of Physics, University of Helsinki, Helsinki, Finland; HUS Medical Imaging Center, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.

Neuroimage
|July 8, 2018
PubMed
Summary
This summary is machine-generated.

Detecting outlier slices in diffusion MRI data before image transformation is crucial. A new tool, SOLID, identifies these problematic slices, improving diffusion imaging analysis and reducing data loss.

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Area of Science:

  • Medical Imaging
  • Neuroscience
  • Biophysics

Background:

  • Diffusion MRI is essential for characterizing tissue microstructure.
  • Image artefacts, particularly subject motion, challenge accurate diffusion MRI analysis.
  • Existing voxelwise outlier detection methods struggle with slicewise intensity errors after image registration.

Purpose of the Study:

  • To develop an automated tool (SOLID) for detecting outlier slices in diffusion MRI data before geometrical transformations.
  • To integrate data uncertainty information from SOLID into diffusion MRI model estimation frameworks.
  • To improve the robustness and accuracy of diffusion MRI analysis by addressing slicewise artefacts.

Main Methods:

  • Development of SOLID, an automated tool for slicewise outlier detection using a straightforward intensity metric.
  • Implementation of a framework to incorporate SOLID's uncertainty information into diffusion MRI model estimation.
  • Validation through comprehensive simulations and analysis of neonatal and in vivo human diffusion MRI datasets.

Main Results:

  • SOLID demonstrates high sensitivity and specificity in detecting outlier slices in simulations, outperforming other methods.
  • The SOLID-informed estimation framework effectively downweights uncertain measurements, improving iterative algorithm convergence.
  • Validation on neonatal data confirmed SOLID's ability to identify problematic slices in large population studies.

Conclusions:

  • SOLID provides an effective and efficient solution for detecting slicewise outliers in diffusion MRI data prior to transformation.
  • The integration of uncertainty information enhances the reliability and accuracy of diffusion MRI model estimation.
  • This approach supports more robust characterization of diffusion processes in challenging datasets, including large-scale studies.