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Updated: Feb 7, 2026

Automated Quantification and Analysis of Cell Counting Procedures Using ImageJ Plugins
Published on: November 17, 2016
Automated noninvasive epithelial cell counting in phase contrast microscopy images with automated parameter selection
R Flight1, G Landini2, I B Styles3
1Physical Sciences of Imaging in the Biomedical Sciences Doctoral Training Centre, University of Birmingham, Edgbaston, Birmingham, B5 7EG, U.K.
This study introduces a rapid, inexpensive phase contrast microscopy method for non-destructive cell counting in cultures. This technique enables longitudinal cell growth tracking, overcoming limitations of traditional destructive methods.
Area of Science:
- Cell Biology
- Microscopy Techniques
- Quantitative Imaging
Background:
- Traditional cell counting for proliferation studies is often destructive, preventing longitudinal monitoring of cell growth.
- Current methods are time-consuming and resource-intensive, particularly for adherent cell cultures.
- There is a need for non-destructive, efficient cell counting techniques in cell culture research.
Purpose of the Study:
- To develop an inexpensive, rapid, and widely applicable phase contrast microscopy-based technique for non-destructive cell counting.
- To enable longitudinal tracking of cell growth in cultures.
- To provide a validated method for generating cell growth curves.
Main Methods:
- A phase contrast microscopy technique was developed, emulating contrast changes from defocused bright field images.
- Image processing involved global thresholding for segmentation, with cell counts derived from segmented regions.
- Linear discriminant analysis was employed to remove spurious noise and improve cell count accuracy.
Main Results:
- The developed technique provides accurate cell counts, validated against manual counting.
- The method successfully generated growth curves for oral keratinocyte cultures.
- The technique demonstrated broad applicability for researchers with standard laboratory imaging equipment.
Conclusions:
- A novel, cost-effective, and rapid phase contrast microscopy method for non-destructive cell counting has been established.
- This technique overcomes the limitations of destructive cell counting, allowing for longitudinal studies.
- The method is suitable for generating reliable cell growth curves and has wide utility in cell culture research.
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