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Genes within Genes in Bacterial Genomes.

Sezen Meydan1, Nora Vázquez-Laslop1, Alexander S Mankin1

  • 1Center for Biomolecular Sciences, University of Illinois at Chicago, Chicago, IL 60607.

Microbiology Spectrum
|July 14, 2018
PubMed
Summary

Bacteria can produce multiple proteins from a single gene using alternative translation start sites. This "genes-within-genes" strategy expands the bacterial proteome and can yield proteins with novel functions.

Area of Science:

  • Molecular Biology
  • Genetics
  • Bacterial Physiology

Background:

  • The standard genetic code in bacteria follows a "one gene-one protein" model.
  • Bacterial mRNA structure and translation dynamics allow for deviations from standard protein encoding.
  • Alternative translation initiation sites within a single gene can lead to the expression of multiple proteins.

Purpose of the Study:

  • To review known bacterial genes that encode multiple proteins from a single mRNA.
  • To discuss the functions of alternative polypeptides generated from additional translation start sites.
  • To explore systematic methods for discovering novel translation initiation sites.

Main Methods:

  • Review of existing literature on bacterial gene expression and translation.

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  • Analysis of known examples of alternative translation initiation.
  • Discussion of proteome- and genome-wide approaches for site discovery.
  • Main Results:

    • Bacteria can utilize internal mRNA codons as alternative translation start sites.
    • Proteins from alternative start sites within the same frame share C-terminal sequences but differ at the N-terminus.
    • Proteins from alternative start sites in different frames have entirely different sequences.
    • Alternative proteins generated via the "genes-within-genes" strategy can possess important functions.

    Conclusions:

    • Alternative translation initiation is a significant mechanism for expanding bacterial proteomes.
    • The "genes-within-genes" strategy allows for the generation of functionally diverse proteins from a single gene.
    • Systematic proteomic and genomic approaches are crucial for uncovering the full extent of alternative translation.