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lncRNA - Long Non-coding RNAs02:39

lncRNA - Long Non-coding RNAs

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In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
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Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
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PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
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A peptide bond covalently attaches amino acids through a dehydration reaction. One amino acid's carboxyl group and another amino acid's amino group combine, releasing a water molecule. The resulting bond is the peptide bond. The products that such linkages form are peptides. As more amino acids join this growing chain, the resulting chain is a polypeptide. Each polypeptide has a free amino group at one end. This end has the N-terminal, or the amino-terminal, and the other end has a free...
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Overexpressing Long Noncoding RNAs Using Gene-activating CRISPR
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The small peptide world in long noncoding RNAs.

Seo-Won Choi1, Hyun-Woo Kim1, Jin-Wu Nam1

  • 1Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea.

Briefings in Bioinformatics
|July 17, 2018
PubMed
Summary

Long noncoding RNAs (lncRNAs), once thought non-coding, are now known to produce functional micropeptides. This review explores lncRNA classification, coding potential, and the significance of these encoded peptides.

Keywords:
coding-potential predictionlong noncoding RNA (lncRNA)small ORFsmall peptide

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Area of Science:

  • Molecular Biology
  • Genomics
  • RNA Biology

Background:

  • Long noncoding RNAs (lncRNAs) are RNA transcripts exceeding 200 nucleotides with no protein-coding function.
  • Advanced sequencing and classification methods have identified numerous lncRNAs in various genomes.
  • Emerging evidence indicates that some lncRNAs can be translated into functional small peptides, also termed micropeptides.

Purpose of the Study:

  • To review methodologies for classifying lncRNAs.
  • To examine the evidence and methods for assessing the coding potential of lncRNAs.
  • To discuss the functional importance of micropeptides derived from lncRNAs.

Main Methods:

  • Literature review of studies on lncRNA classification.
  • Analysis of research investigating lncRNA coding potential using bioinformatics and experimental approaches.
  • Synthesis of findings on the biological roles of lncRNA-encoded micropeptides.

Main Results:

  • Established and emerging methods for lncRNA classification are presented.
  • The potential for lncRNAs to encode micropeptides is supported by accumulating evidence.
  • Functional studies highlight the significance of these micropeptides in various biological processes.

Conclusions:

  • lncRNAs represent a dynamic layer of gene regulation with coding potential.
  • The discovery of micropeptides expands our understanding of the functional landscape of the transcriptome.
  • Further research into lncRNA-derived peptides is crucial for uncovering novel biological mechanisms and therapeutic targets.