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Updated: Feb 7, 2026

Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
SHP2 Inhibition Prevents Adaptive Resistance to MEK Inhibitors in Multiple Cancer Models
Carmine Fedele1, Hao Ran2, Brian Diskin3
1Laura and Isaac Perlmutter Cancer Center, New York University School of Medicine, NYU Langone Health, New York, New York. Benjamin.Neel@nyumc.org KwanHo.Tang@nyumc.org Carmine.Fedele@nyumc.org.
Abstract:
Adaptive resistance to MEK inhibitors (MEKi) typically occurs via induction of genes for different receptor tyrosine kinases (RTK) and/or their ligands, even in tumors of the same histotype, making combination strategies challenging. SHP2 (PTPN11) is required for RAS/ERK pathway activation by most RTKs and might provide a common resistance node. We found that combining the SHP2 inhibitor SHP099 with a MEKi inhibited the proliferation of multiple cancer cell lines in vitro PTPN11 knockdown/MEKi treatment had similar effects, whereas expressing SHP099 binding-defective PTPN11 mutants conferred resistance, demonstrating that SHP099 is on-target. SHP099/trametinib was highly efficacious in xenograft and/or genetically engineered models of KRAS-mutant pancreas, lung, and ovarian cancers and in wild-type RAS-expressing triple-negative breast cancer. SHP099 inhibited activation of KRAS mutants with residual GTPase activity, impeded SOS/RAS/MEK/ERK1/2 reactivation in response to MEKi, and blocked ERK1/2-dependent transcriptional programs. We conclude that SHP099/MEKi combinations could have therapeutic utility in multiple malignancies.Significance: MEK inhibitors show limited efficacy as single agents, in part because of the rapid development of adaptive resistance. We find that SHP2/MEK inhibitor combinations prevent adaptive resistance in multiple cancer models expressing mutant and wild-type KRAS. Cancer Discov; 8(10); 1237-49. ©2018 AACR. See related commentary by Torres-Ayuso and Brognard, p. 1210 This article is highlighted in the In This Issue feature, p. 1195.
Insights
Combining SHP2 inhibitors with MEK inhibitors (MEKi) overcomes adaptive resistance in various cancers. This combination therapy targets key signaling pathways, offering new hope for patients with KRAS-mutant and wild-type RAS cancers.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Adaptive resistance to MEK inhibitors (MEKi) is a major challenge in cancer therapy, often driven by receptor tyrosine kinase (RTK) signaling.
- SHP2 phosphatase is a critical node in RTK-mediated RAS/ERK pathway activation and a potential target to overcome resistance.
Purpose of the Study:
- To investigate the therapeutic potential of combining a SHP2 inhibitor (SHP099) with a MEK inhibitor (MEKi) to overcome adaptive resistance in cancer.
- To elucidate the mechanism by which SHP099/MEKi combination therapy inhibits cancer cell proliferation and tumor growth.
Main Methods:
- In vitro proliferation assays using cancer cell lines treated with SHP099 and/or MEKi.
- In vivo efficacy studies in xenograft and genetically engineered mouse models of various cancers.
- Molecular analyses including PTPN11 knockdown, mutant PTPN11 expression, and assessment of RAS/ERK pathway signaling.
Main Results:
- SHP099 combined with MEKi effectively inhibited proliferation of multiple cancer cell lines.
- The combination therapy demonstrated high efficacy in preclinical models of KRAS-mutant pancreas, lung, and ovarian cancers, as well as wild-type RAS triple-negative breast cancer.
- SHP099 blocked MEKi-induced reactivation of the RAS/ERK pathway by inhibiting KRAS activation and downstream signaling.
Conclusions:
- SHP2 inhibition in combination with MEKi is a promising strategy to prevent and overcome adaptive resistance in diverse malignancies.
- This combination therapy targets both mutant and wild-type RAS-driven cancers, highlighting its broad therapeutic potential.
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