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Updated: Feb 7, 2026

Quasi-metagenomic Analysis of Salmonella from Food and Environmental Samples
Published on: October 25, 2018
Salmonella in Foods: A Reemerging Problem
1Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy.
Human salmonellosis cases are rising in the EU, linked to increased Salmonella Enteritidis in hens and contaminated eggs. New strategies, including improved surveillance and whole-genome sequencing, are needed to control outbreaks.
Area of Science:
- Food Safety
- Veterinary Microbiology
- Public Health Epidemiology
Background:
- Human salmonellosis incidence in the European Union has shown an increasing trend since 2013.
- A significant rise in Salmonella Enteritidis prevalence was observed in laying hen flocks, increasing by 17% in 2015 and 57% in 2016.
- Eggs, egg products, and ready-to-eat foods with long shelf lives remain primary sources of foodborne Salmonella outbreaks.
Purpose of the Study:
- To identify the reasons behind the increasing trend of human salmonellosis in the EU.
- To propose specific actions to reverse the rise in human salmonellosis cases.
- To enhance the effectiveness of control measures against Salmonella.
Main Methods:
- Analysis of trends in human salmonellosis and Salmonella Enteritidis prevalence in laying hens.
- Identification of key food vehicles associated with Salmonella outbreaks.
- Proposal of revised sampling schemes, integration of microbiological criteria, and enhanced epidemiological investigations using whole-genome sequencing.
Main Results:
- Salmonella Enteritidis prevalence in laying hens increased substantially between 2014 and 2016.
- Eggs, egg products, and ready-to-eat foods are identified as major contributors to foodborne Salmonella outbreaks.
- Whole-genome sequencing is highlighted as a crucial tool for tracking and controlling salmonellosis.
Conclusions:
- Effective control of human salmonellosis requires a multi-faceted approach.
- Revision of sampling strategies and integration of microbiological criteria are essential for accurate pathogen detection and risk management.
- Advanced epidemiological tools like whole-genome sequencing are critical for targeted interventions and verifying prevention measure efficacy.
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