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Updated: Feb 5, 2026

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase
Published on: April 29, 2010
ATR-Mediated Global Fork Slowing and Reversal Assist Fork Traverse and Prevent Chromosomal Breakage at DNA
Karun Mutreja1, Jana Krietsch1, Jeannine Hess2
1Institute of Molecular Cancer Research, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.
Abstract:
Interstrand cross-links (ICLs) are toxic DNA lesions interfering with DNA metabolism that are induced by widely used anticancer drugs. They have long been considered absolute roadblocks for replication forks, implicating complex DNA repair processes at stalled or converging replication forks. Recent evidence challenged this view, proposing that single forks traverse ICLs by yet elusive mechanisms. Combining ICL immunolabeling and single-molecule approaches in human cells, we now show that ICL induction leads to global replication fork slowing, involving forks not directly challenged by ICLs. Active fork slowing is linked to rapid recruitment of RAD51 to replicating chromatin and to RAD51/ZRANB3-mediated fork reversal. This global modulation of fork speed and architecture requires ATR activation, promotes single-fork ICL traverse-here, directly visualized by electron microscopy-and prevents chromosomal breakage by untimely ICL processing. We propose that global fork slowing by remodeling provides more time for template repair and promotes bypass of residual lesions, limiting fork-associated processing.
Insights
Interstrand cross-links (ICLs) slow DNA replication forks globally, not just at the lesion site. This global slowing, mediated by RAD51 and ZRANB3, allows for DNA repair and prevents chromosomal damage.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- Interstrand cross-links (ICLs) are DNA lesions induced by anticancer drugs, traditionally viewed as replication fork roadblocks.
- The mechanisms by which replication forks handle ICLs, particularly single-fork traversal, remain incompletely understood.
Purpose of the Study:
- To investigate the global impact of ICLs on DNA replication fork dynamics in human cells.
- To elucidate the molecular mechanisms underlying replication fork adaptation to ICLs and their role in preventing genomic instability.
Main Methods:
- Immunolabeling of ICLs combined with single-molecule assays in human cells.
- Analysis of replication fork speed, architecture, and protein recruitment (RAD51, ZRANB3).
- Visualization of single-fork ICL traversal using electron microscopy and assessment of ATR pathway activation.
Main Results:
- ICL induction causes global replication fork slowing, affecting forks not directly encountering lesions.
- RAD51 recruitment and RAD51/ZRANB3-mediated fork reversal are critical for this global slowing.
- ATR activation is required for modulating fork speed and architecture, facilitating single-fork ICL traverse and preventing premature DNA breakage.
Conclusions:
- Global replication fork slowing and remodeling, triggered by ICLs, provide a pro-survival mechanism.
- This process allows more time for DNA repair and promotes bypass of residual ICLs, thereby limiting potentially damaging fork-associated processing and preserving genome integrity.
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